Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041517 pacid=23146811 polypeptide=Lus10041517 locus=Lus10041517.g ID=Lus10041517.BGIv1.0 annot-version=v1.0 ATGAGCTACCAGAAGTTCCCCAGCGAGCAGCCGTATCCTCCTCCACCTCCTTCTCAGTCTCCGTATCATGGGAACGAGCCTCCTTACCCGCCGCCGCCGC CGCAGGTCTATCCTCCTCCGTACGAGACTGAGGGCTATCCGCCTCCGCCTTCGCGCCCTGGTGGTTACGCTCCTCCCTATCCGCCACCGCGCCCCCCTCA TCAGCACCGATATGATGGCTACCAAGGTTATTTCGCCGGCGCAGCCCAAGGATATCCTCCTCCTCCTCCAGGTCCCCGTAACCAGTATCAACACTACCAT CAGTATGACCACCACCACAATCACCAGCACCACGACGATTCCGAGGCTTCCTTCCTGCGTGGATGGTATGTCCAATCTCTCGACGTCTTCTAG
AA sequence Show only first row Show all	>Lus10041517 pacid=23146811 polypeptide=Lus10041517 locus=Lus10041517.g ID=Lus10041517.BGIv1.0 annot-version=v1.0 MSYQKFPSEQPYPPPPPSQSPYHGNEPPYPPPPPQVYPPPYETEGYPPPPSRPGGYAPPYPPPRPPHQHRYDGYQGYFAGAAQGYPPPPPGPRNQYQHYH QYDHHHNHQHHDDSEASFLRGWYVQSLDVF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10041517 [exp]	0	1
AT5G44860			unknown protein		Lus10036220 [exp]	1.0	0.9269
AT1G16210			unknown protein		Lus10012520 [exp]	3.0	0.8876
AT3G05670			RING/U-box protein (.1)		Lus10015213 [exp]	4.0	0.8757
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10036577 [exp]	4.9	0.8545
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10017404 [exp]	5.1	0.8931
AT4G36960			RNA-binding (RRM/RBD/RNP motif...		Lus10019341 [exp]	7.7	0.8463
AT2G45290			Transketolase (.1)		Lus10030283 [exp]	11.8	0.8647
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10004712 [exp]	12.0	0.8508
AT5G19860			Protein of unknown function, D...		Lus10013752 [exp]	12.2	0.8418
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Lus10002378 [exp]	12.7	0.8349

Compare expression of checked genes

Lus10041517 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.