Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14040 541 / 0 PHT3;1 phosphate transporter 3;1 (.1) AT3G48850 477 / 2e-169 PHT3;2 phosphate transporter 3;2 (.1) AT2G17270 296 / 7e-99 PHT3;3 phosphate transporter 3;3 (.1) AT5G48970 66 / 6e-12 Mitochondrial substrate carrier family protein (.1) AT4G01100 62 / 2e-10 ADNT1 adenine nucleotide transporter 1 (.1.2) AT1G25380 61 / 4e-10 ATNDT2 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) AT4G11440 60 / 1e-09 Mitochondrial substrate carrier family protein (.1) AT3G21390 57 / 6e-09 Mitochondrial substrate carrier family protein (.1) AT3G53940 57 / 8e-09 Mitochondrial substrate carrier family protein (.1) AT5G51050 56 / 3e-08 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012574 [exp] 687 / 0 AT5G14040 580 / 0.0 phosphate transporter 3;1 (.1) Lus10036014 [exp] 538 / 0 AT5G14040 572 / 0.0 phosphate transporter 3;1 (.1) Lus10016720 [exp] 534 / 0 AT5G14040 568 / 0.0 phosphate transporter 3;1 (.1) Lus10026554 [exp] 291 / 1e-96 AT2G17270 472 / 8e-169 phosphate transporter 3;3 (.1) Lus10013839 [exp] 288 / 3e-95 AT2G17270 469 / 2e-167 phosphate transporter 3;3 (.1) Lus10035975 [exp] 267 / 4e-85 AT2G17270 398 / 7e-137 phosphate transporter 3;3 (.1) Lus10032365 [exp] 68 / 2e-12 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033948 [exp] 67 / 4e-12 AT4G01100 604 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033947 [exp] 66 / 9e-12 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G322300 [exp] 555 / 0 AT5G14040 533 / 0.0 phosphate transporter 3;1 (.1) Potri.017G060800 [exp] 546 / 0 AT5G14040 542 / 0.0 phosphate transporter 3;1 (.1) Potri.012G105100 [exp] 515 / 0 AT5G14040 499 / 4e-178 phosphate transporter 3;1 (.1) Potri.015G104400 [exp] 499 / 3e-178 AT5G14040 489 / 2e-174 phosphate transporter 3;1 (.1) Potri.004G207200 [exp] 298 / 8e-100 AT2G17270 479 / 3e-172 phosphate transporter 3;3 (.1) Potri.005G098800 [exp] 280 / 1e-92 AT2G17270 447 / 2e-159 phosphate transporter 3;3 (.1) Potri.007G019000 [exp] 66 / 5e-12 AT5G66380 463 / 8e-166 folate transporter 1 (.1) Potri.001G094100 [exp] 65 / 2e-11 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.014G095400 [exp] 65 / 2e-11 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.006G099800 [exp] 65 / 3e-11 AT5G01500 503 / 1e-178 thylakoid ATP/ADP carrier (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10041519 pacid=23146980 polypeptide=Lus10041519 locus=Lus10041519.g ID=Lus10041519.BGIv1.0 annot-version=v1.0 ATGGCGTTCTCCGATTCCTCCAAGAACTCGCTCATCCCGAGCTTCCTCTACTCGTCCACCATTTCCCCCAAGTCGGTCACCTTGTCTAAGCTCCTCCTCC ACTCAAACCCTACCGAATCCGTCCTCCCTCAGTCCCCGAGGAAGCCCTCCCTCGGCAGCCGAGGATTTTCTATCCCGGCTCCTAGCGAGCCGTTCGGCAA GATCGAGCTGTACTCTCCTGCTTTCTACGCTGCCTGTACCGCCGGAGGAATCCTCAGCTGTGGTCTCACTCACATGGCTGTCACTCCTCTTGACCTTGTC AAGTGCAATATGCAGATTGATCCTGTGAAGTACAAGGGCATCTCGTCTGGTTTTGGAGTGTTGTTTAAGGAGCAGGGCTTTAGAGGTTTCTTCAGGGGAT GGGTGCCTACCCTTCTTGGGTACAGTGCTCAGGGTGCCTGCAAGTTTGGATTCTATGAATTCTTCAAGAAATACTACTCCGATATTGCTGGCCCAGAATA TGCTGCCAAGTATAAGACCTTGATCTACCTGGCTGGTTCTGCATCCGCTGAGGTGATTGCTGACATTGCCCTTTGCCCATTTGAGGCTGTGAAAGTTCGA GTGCAAACTCAGCCTGGGTTTGCTAGAGGTCTCTCTGATGGCCTTCCCAAGTTTGTCAGATCTGAAGGAGCTTTGGGATTGTACAAGGGTATTGTTCCAC TCTGGGGACGTCAAATTCCTTACACCATGATGAAGTTTGCTTCATTTGAAATGGTTGTGGAGATGATCTATAAGTATGCAGTACCCCGACCAAAGAGCGA ATGCAGCAAAGGACAGCAGCTTGGTATCAGTTTCGCCGGTGGTTACATTGCTGGTGTTTTGTGTGCCATTGTCTCACATCCAGCTGATAATCTTGTATCT TTCCTCAACAATGCCAAGGGAGCAACTGTTGGTGATGCCGTGAAGAAGATTGGAATGGTGGGTCTCTTTACTCGTGGGCTCCCACTACGTATTGTCATGA TTGGAACTCTTACCGGAGCCCAATGGGGTATCTATGATGCATTCAAAGTTTTCGTTGGGCTGCCAACCACTGGTGGGGCTCCTCCTCCAGCTGCTATTGC TGATTCTGAGGTAGCCAAGGCCTAA
AA sequence Show only first row Show all	>Lus10041519 pacid=23146980 polypeptide=Lus10041519 locus=Lus10041519.g ID=Lus10041519.BGIv1.0 annot-version=v1.0 MAFSDSSKNSLIPSFLYSSTISPKSVTLSKLLLHSNPTESVLPQSPRKPSLGSRGFSIPAPSEPFGKIELYSPAFYAACTAGGILSCGLTHMAVTPLDLV KCNMQIDPVKYKGISSGFGVLFKEQGFRGFFRGWVPTLLGYSAQGACKFGFYEFFKKYYSDIAGPEYAAKYKTLIYLAGSASAEVIADIALCPFEAVKVR VQTQPGFARGLSDGLPKFVRSEGALGLYKGIVPLWGRQIPYTMMKFASFEMVVEMIYKYAVPRPKSECSKGQQLGISFAGGYIAGVLCAIVSHPADNLVS FLNNAKGATVGDAVKKIGMVGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVGLPTTGGAPPPAAIADSEVAKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Lus10041519 [exp]	0	1
AT5G08680			ATP synthase alpha/beta family...		Lus10034631 [exp]	2.0	0.9733
AT2G40800			unknown protein		Lus10030504 [exp]	2.4	0.9612
AT5G08680			ATP synthase alpha/beta family...		Lus10035264 [exp]	4.5	0.9619
AT3G62120			Class II aaRS and biotin synth...		Lus10016281 [exp]	5.5	0.9553
AT5G08680			ATP synthase alpha/beta family...		Lus10034632 [exp]	6.0	0.9571
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Lus10007718 [exp]	6.3	0.9395
AT5G07350		TSN1, AtTudor1	Arabidopsis thaliana TUDOR-SN ...		Lus10043020 [exp]	6.5	0.9540
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Lus10019702 [exp]	7.3	0.9244
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10004938 [exp]	7.7	0.9546
AT4G35890			winged-helix DNA-binding trans...		Lus10014254 [exp]	8.8	0.9472

Compare expression of checked genes

Lus10041519 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.