Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26790 233 / 3e-75 B3 FUS3 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) AT3G24650 137 / 4e-36 B3 SIS10, ABI3 SUGAR INSENSITIVE 10, ABSCISIC ACID INSENSITIVE 3, ABA INSENSITIVE 3, AP2/B3-like transcriptional factor family protein (.1) AT1G28300 124 / 8e-33 B3 LEC2 LEAFY COTYLEDON 2, AP2/B3-like transcriptional factor family protein (.1) AT2G30470 98 / 3e-22 B3 HSI2, VAL1 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) AT4G32010 93 / 1e-20 B3 HSL1, HSI2-L1, VAL2 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) AT4G21550 77 / 2e-15 B3 HSI2-L2, VAL3 VP1/ABI3-like 3 (.1) AT1G13260 64 / 2e-11 AP2_ERF EDF4, RAV1 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) AT1G68840 63 / 6e-11 AP2_ERF EDF2, RAV2, RAP2.8, TEM2, AtRAV2 TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2) AT4G01500 61 / 2e-10 B3 NGA4 NGATHA4, AP2/B3-like transcriptional factor family protein (.1) AT1G25560 60 / 8e-10 AP2_ERF EDF1, TEM1 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012572 [exp] 457 / 5e-163 AT3G26790 259 / 4e-85 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Lus10041520 [exp] 164 / 7e-49 AT3G26790 51 / 2e-07 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Lus10022820 [exp] 140 / 2e-38 AT3G24650 313 / 1e-100 SUGAR INSENSITIVE 10, ABSCISIC ACID INSENSITIVE 3, ABA INSENSITIVE 3, AP2/B3-like transcriptional factor family protein (.1) Lus10011888 [exp] 135 / 4e-35 AT3G24650 312 / 6e-96 SUGAR INSENSITIVE 10, ABSCISIC ACID INSENSITIVE 3, ABA INSENSITIVE 3, AP2/B3-like transcriptional factor family protein (.1) Lus10012573 [exp] 103 / 6e-27 AT3G26790 88 / 7e-22 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Lus10015428 [exp] 96 / 1e-22 AT1G28300 163 / 1e-47 LEAFY COTYLEDON 2, AP2/B3-like transcriptional factor family protein (.1) Lus10011245 [exp] 96 / 1e-21 AT2G30470 399 / 1e-122 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) Lus10018440 [exp] 96 / 1e-21 AT4G32010 487 / 1e-158 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10025226 [exp] 95 / 3e-21 AT4G32010 808 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G322700 [exp] 244 / 1e-79 AT3G26790 279 / 3e-93 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Potri.017G061200 [exp] 233 / 4e-75 AT3G26790 288 / 8e-97 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Potri.002G252000 [exp] 134 / 5e-35 AT3G24650 499 / 2e-167 SUGAR INSENSITIVE 10, ABSCISIC ACID INSENSITIVE 3, ABA INSENSITIVE 3, AP2/B3-like transcriptional factor family protein (.1) Potri.004G045800 [exp] 119 / 3e-30 AT1G28300 201 / 2e-60 LEAFY COTYLEDON 2, AP2/B3-like transcriptional factor family protein (.1) Potri.011G054000 [exp] 115 / 7e-29 AT1G28300 154 / 5e-43 LEAFY COTYLEDON 2, AP2/B3-like transcriptional factor family protein (.1) Potri.013G157500 [exp] 97 / 5e-22 AT2G30470 767 / 0.0 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) Potri.019G130300 [exp] 94 / 4e-21 AT2G30470 757 / 0.0 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) Potri.016G136500 [exp] 94 / 6e-21 AT4G32010 789 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Potri.011G043600 [exp] 94 / 6e-21 AT4G32010 479 / 5e-157 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Potri.006G108300 [exp] 94 / 7e-21 AT4G32010 743 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10041521 pacid=23146864 polypeptide=Lus10041521 locus=Lus10041521.g ID=Lus10041521.BGIv1.0 annot-version=v1.0 ATGATGAATGGCGCTGATGATGATGACGACGACGAAACCGAGGCGTGTTCGATGGGTACAGCTGGCCGAAACCCGGCCGCCGATGATGGTCCATCGGGTC ATGACATTCGGGTCAGGGGGTTGACCCGGCGGCAGCATCCTTCAGCTCACCACCTCCTCGTCCTTCCATCGTCGGCGGCGGCGAATGGGGTAAGGAGGAA GAAGAGAATGGCGAGGCAGAGGAGACCTCCTTCCACCTTCACTCATCTCTTTTCCTCTTTCATCACTCCAACCAATACCATTTCCGACTACTCCTCTCTG CACGTGCAGCCTCCTCCTCCACCTCTCCCCGCACGTGAAATTGATCCGAGGAGCTTAAGGTTCCTATTTCAAAAGAAGCTCAAGAACAGTGACGTCAGCT CCTTAAGGAGAATGGTCCTTCCAAAGAAAGCAGCAGAGACACACCTCCCTGTACTAGAATCAAAGGAAGGAATCCCCATCACCATGTATGACTTGGATGG TTCCCATCTCTGGACCTTCAAGTACAGGTATTGGCCCAATAACAATAGCAGGATGTACGTCTTGGAGAAAACTGGGGAGTTTGTCAACGCACATGGTTTG CAACTAGGAGACTTCATCACCGTTTATCAAGATTTCCATACCCACACTTATGTGATCCAGGCGAGAAAAGCCTCGGAGGAGGACAACATATTTGCTGACA TCATGAACAGTGATGCTATGACTGACCATATCTTGCTTCAGGATCTTGCTACTAAACCCAACTCATCATCCTTGTACTATGATCATCACACAGCCGCCAT CGGAACTAGTACTGCTGCTGCTGCAAGTTTTTCCTTCATCTATGACAGTACTAGTACCTTCTCAAATGACTCTCCTCTCGACTTTTTGGGAGGATCCCTT ACAAACTTCCCTGCAACTAGTCACAGCAACTTTGGATCTCTGTCCCTCGACGAGTTCTATTAG
AA sequence Show only first row Show all	>Lus10041521 pacid=23146864 polypeptide=Lus10041521 locus=Lus10041521.g ID=Lus10041521.BGIv1.0 annot-version=v1.0 MMNGADDDDDDETEACSMGTAGRNPAADDGPSGHDIRVRGLTRRQHPSAHHLLVLPSSAAANGVRRKKRMARQRRPPSTFTHLFSSFITPTNTISDYSSL HVQPPPPPLPAREIDPRSLRFLFQKKLKNSDVSSLRRMVLPKKAAETHLPVLESKEGIPITMYDLDGSHLWTFKYRYWPNNNSRMYVLEKTGEFVNAHGL QLGDFITVYQDFHTHTYVIQARKASEEDNIFADIMNSDAMTDHILLQDLATKPNSSSLYYDHHTAAIGTSTAAAASFSFIYDSTSTFSNDSPLDFLGGSL TNFPATSHSNFGSLSLDEFY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26790	B3	FUS3	FUSCA 3, AP2/B3-like transcrip...		Lus10041521 [exp]	0	1

Compare expression of checked genes

Lus10041521 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.