Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14060 824 / 0 CARAB-AK-LYS Aspartate kinase family protein (.1.2) AT3G02020 820 / 0 AK3 aspartate kinase 3 (.1) AT5G13280 791 / 0 AK1, AK-LYS1 aspartate kinase 1 (.1) AT4G19710 167 / 1e-43 AK-HSDHII, AK-HSDH ,AK-HSDH II aspartate kinase-homoserine dehydrogenase ii (.1.2) AT1G31230 164 / 1e-42 AK-HSDHI ,AK-HSDH I aspartate kinase-homoserine dehydrogenase i (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012568 [exp] 1150 / 0 AT5G14060 820 / 0.0 Aspartate kinase family protein (.1.2) Lus10030339 [exp] 166 / 3e-43 AT4G19710 1415 / 0.0 aspartate kinase-homoserine dehydrogenase ii (.1.2) Lus10041071 [exp] 155 / 1e-39 AT4G19710 1373 / 0.0 aspartate kinase-homoserine dehydrogenase ii (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G236800 [exp] 885 / 0 AT3G02020 845 / 0.0 aspartate kinase 3 (.1) Potri.014G145700 [exp] 883 / 0 AT5G14060 805 / 0.0 Aspartate kinase family protein (.1.2) Potri.013G099500 [exp] 175 / 2e-46 AT4G19710 1425 / 0.0 aspartate kinase-homoserine dehydrogenase ii (.1.2) Potri.019G071700 [exp] 168 / 3e-44 AT4G19710 1470 / 0.0 aspartate kinase-homoserine dehydrogenase ii (.1.2) Potri.004G180600 [exp] 74 / 2e-16 AT3G02020 71 / 2e-16 aspartate kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0070 [flax] [poplar] ACT PF01842 [flax] [poplar] ACT ACT domain CL0070 [flax] [poplar] PF00696 [flax] [poplar] AA_kinase Amino acid kinase family
Representative CDS sequence Show only first row Show all	>Lus10041523 pacid=23146890 polypeptide=Lus10041523 locus=Lus10041523.g ID=Lus10041523.BGIv1.0 annot-version=v1.0 ATGTCGGCCGCATTGCATTTCTCCAGTCCCCGAGTTTCCCGCCCTATTAATCTTCCGAACACTGCAGCTCTTTCCTGTTCCAGCCGGTTCCGTTTCGCGA ATTCCGTCGCCGTTACTTCCGGATTCTGCGAAAGTTCCTGGCTTTCCTGTAGCCGTAGGGTTTTACCACGAATTGCTTGCGATGCTCGATCTGTGGACGT GCTGGAAAAGGTCGTTGCGACGACGGATCAATTGGACGGCGGAGCTGACACTGAGAAGCAGTTCTCATGTGTTATGAAGTTCGGCGGCTCCTCCCTGGCC TCTGCCGAGAGGATGAAGGAGGTTGCTCACCTGATCCAGAGTTTTCCGGAAGAAAACCCTATCATTGTCTTGTCTGCAATGGGGAAGACGACCAATAAAC TTCTGTTGGCCGGGGAGAAAGCAGTGAGCTGTGGTGTCACTAACGTAGAACTTATTGATGAACTTACTTTCATTAGGGATTTGCATATCCGAACTCTAGA GGAGCTTGGATTGGAGAAGGTGGTTGTTGCCAAGCACCTGGAAGAACTAGAACAACTCTTAAAAGGAGTTGCTATGATGAAAGAATTGACTCCACGAACA AGAGACTACCTAGTTTCCTTTGGAGAGTGTATGTCGACCAGAATTTTTGCAGCGTATATGAATATGATTGGTACCAGAGCACGTCAGTATGATGCATTTG ATGTTGGTTTCATCACAACAGATGACTTCACGAATGCAGACATACTTGAAGCAACTTATCCTGCTGTTGCAAAGAGGTTACATGGAGATTGGATTAGCGA TCCTGCAATACCGATAGTTACTGGGTTTCTCGGAAAGGGCTGGAAGTCTTGTGCCATTACAACCCTGGGCAGGGGTGGCAGTGATTTAACTGCTACAACC ATTGGGAAAGCTTTGGGTTTGCGAGAAATTCAGGTGTGGAAGGATGTTGATGGAGTTTTGACGTGTGACCCTAATATATATCCCAAAGCAGAGCCTGTTC CATTCTTGACTTTTGACGAAGCAGCAGAACTTGCATATTTTGGTGCCCAGGTTCTGCATCCGCAATCCATGAGACCTGCTAGGGAAGGTGATATTCCAGT TAGAGTTAAGAATTCTTACAACCCGAATGCTCCAGGAACTCTTATTACAAGAACAAGGGACATGAGTAAGGCTGTATTAACTAGTATAGTTTTGAAACGG AACGTTACAATGTTGGACATTGTTAGTACTCGTATGCTAGGTCAATTTGGCTTTCTAGCAAAGGTGTTTTCAACCTTTGAAGATTTAGGAATATCAGTGG ATGTTGTAGCTACCAGTGAAGTTAGTATCTCACTGACGCTTGACCCATCTAAGCTATGGAGCAGAGAGCTTATTCAGCAGGCAAGCATACCCAATGAACT TGATCACGTGGTGGAAGAATTGGAGAAAATTGCCGTAGTGAACCTTCTTCAGCACAGATCAATAATATCTTTGATCGGGAACGTGCAGAGGTCCTCGCTG ATACTAGAGAAGGTGTTCAAAGTTCTTAGAGCTAACGGAGTTAACGTTCAGATGATCTCCCAGGGTGCTTCTAAGGTGAACATCTCGTTGATTGTCAACG ACAATGAATCAGAGCAGTGCGTAAGAGCCCTCCATGCAGCCTTCTTCGAGACCGACATTGCAGAACTAGATTGTGAACATGGCAGCACTTTTAATGGCAA CTGTGCACCCTCTAAATGA
AA sequence Show only first row Show all	>Lus10041523 pacid=23146890 polypeptide=Lus10041523 locus=Lus10041523.g ID=Lus10041523.BGIv1.0 annot-version=v1.0 MSAALHFSSPRVSRPINLPNTAALSCSSRFRFANSVAVTSGFCESSWLSCSRRVLPRIACDARSVDVLEKVVATTDQLDGGADTEKQFSCVMKFGGSSLA SAERMKEVAHLIQSFPEENPIIVLSAMGKTTNKLLLAGEKAVSCGVTNVELIDELTFIRDLHIRTLEELGLEKVVVAKHLEELEQLLKGVAMMKELTPRT RDYLVSFGECMSTRIFAAYMNMIGTRARQYDAFDVGFITTDDFTNADILEATYPAVAKRLHGDWISDPAIPIVTGFLGKGWKSCAITTLGRGGSDLTATT IGKALGLREIQVWKDVDGVLTCDPNIYPKAEPVPFLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLITRTRDMSKAVLTSIVLKR NVTMLDIVSTRMLGQFGFLAKVFSTFEDLGISVDVVATSEVSISLTLDPSKLWSRELIQQASIPNELDHVVEELEKIAVVNLLQHRSIISLIGNVQRSSL ILEKVFKVLRANGVNVQMISQGASKVNISLIVNDNESEQCVRALHAAFFETDIAELDCEHGSTFNGNCAPSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14060		CARAB-AK-LYS	Aspartate kinase family protei...		Lus10041523 [exp]	0	1
AT5G10240		ASN3	asparagine synthetase 3 (.1.2)		Lus10041698 [exp]	3.9	0.8848
AT5G19260		FAF3	FANTASTIC FOUR 3, Protein of u...		Lus10000655 [exp]	8.9	0.8017
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10001014 [exp]	12.6	0.8145
AT3G17970		ATTOC64-III	translocon at the outer membra...		Lus10009682 [exp]	13.0	0.8226
AT1G67325			Ran BP2/NZF zinc finger-like s...		Lus10011357 [exp]	16.2	0.7450
AT2G17030			F-box family protein with a do...		Lus10021517 [exp]	19.0	0.7979
AT5G26710			Glutamyl/glutaminyl-tRNA synth...		Lus10026044 [exp]	20.5	0.7900
AT5G14060		CARAB-AK-LYS	Aspartate kinase family protei...		Lus10012568 [exp]	23.0	0.8586
AT1G03475		LIN2, HEMF1, AT...	LESION INITIATION 2, Coproporp...		Lus10021087 [exp]	25.0	0.8099
AT5G23890			unknown protein		Lus10014972 [exp]	25.4	0.8025

Compare expression of checked genes

Lus10041523 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.