Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07860 164 / 2e-51 Ubiquitin-like superfamily protein (.1) AT5G25340 60 / 8e-11 Ubiquitin-like superfamily protein (.1) AT4G32270 59 / 1e-10 Ubiquitin-like superfamily protein (.1.2) AT1G80060 55 / 5e-09 Ubiquitin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012567 [exp] 306 / 2e-107 AT3G07860 205 / 3e-68 Ubiquitin-like superfamily protein (.1) Lus10006187 [exp] 66 / 8e-13 AT4G32270 141 / 5e-41 Ubiquitin-like superfamily protein (.1.2) Lus10041040 [exp] 65 / 2e-12 AT5G25340 139 / 2e-40 Ubiquitin-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G015002 [exp] 231 / 1e-77 AT3G07860 178 / 1e-57 Ubiquitin-like superfamily protein (.1) Potri.006G255500 [exp] 60 / 1e-10 AT5G25340 164 / 9e-50 Ubiquitin-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041524 pacid=23146675 polypeptide=Lus10041524 locus=Lus10041524.g ID=Lus10041524.BGIv1.0 annot-version=v1.0 ATGGAGGAAGTAGGAAGCGCTTCAGCTTCAAGGGTTGAACAAGGACACGATGACATTGGAAGCTACAACAGCAGCAACGTGAAGAAAGCCAAACTTCAAT CCACTCTGGCAGCTCTTCTAGAGGATCCCGTACTATCCGATGTCCCCAAGAACCCTTCTCTTTCCGACGTCGACACCCTTATCAGCATCGAATTCGGCAG CGCCATGCGAGTCTCCGTTCTTAAACTCGACGGCACAACTTTTGGTAAGAAAGCTCCCCCATGGTCCCATCCCCTTCTTCTTCAGTTGTTCTGTTTGGCA TTTTATCAAACACTTTTCCTTCAAGCTCTCCTGAGTGAAATATTTACAATCGTTTCTGTTGGGAAAGATGTGGCGTTGATGAATTCGGCTACGGTGAAGG ATTTGAAGCTAGCAATTAAGAAGAAAGTCACTGAAATGGAGCAGTCAAAGATGGGTCATCGCCATATTTCATGGAGGCACATTTGGGCTAATTTTGGCCT TTCACACCGAAACCAAAAGCTTCTCGATGACAGCTCTGCCCTTCAGGATTTCGGCATACGCAACAACTCTCAGGTGAATTTTGTACCCTATGTTGTGTCA AAGGCTTCTGGGAAGCACTTCAAGAGGAAAAAACACCGGTTTTTCCATGGCCTTATTCGTGGATAA
AA sequence Show only first row Show all	>Lus10041524 pacid=23146675 polypeptide=Lus10041524 locus=Lus10041524.g ID=Lus10041524.BGIv1.0 annot-version=v1.0 MEEVGSASASRVEQGHDDIGSYNSSNVKKAKLQSTLAALLEDPVLSDVPKNPSLSDVDTLISIEFGSAMRVSVLKLDGTTFGKKAPPWSHPLLLQLFCLA FYQTLFLQALLSEIFTIVSVGKDVALMNSATVKDLKLAIKKKVTEMEQSKMGHRHISWRHIWANFGLSHRNQKLLDDSSALQDFGIRNNSQVNFVPYVVS KASGKHFKRKKHRFFHGLIRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07860			Ubiquitin-like superfamily pro...		Lus10041524 [exp]	0	1
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10042817 [exp]	5.8	0.6733

Compare expression of checked genes

Lus10041524 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.