Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14030 198 / 7e-63 translocon-associated protein beta (TRAPB) family protein (.1), translocon-associated protein beta (TRAPB) family protein (.2), translocon-associated protein beta (TRAPB) family protein (.3), translocon-associated protein beta (TRAPB) family protein (.4) AT5G66040 128 / 1e-36 STR16 sulfurtransferase protein 16 (.1.2) AT4G35770 128 / 5e-36 ATSEN1, DIN1, SEN1 SENESCENCE ASSOCIATED GENE 1, DARK INDUCIBLE 1, ARABIDOPSIS THALIANA SENESCENCE 1, Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2.3) AT5G66170 106 / 6e-28 STR18 sulfurtransferase 18 (.1.2.3) AT2G21045 82 / 1e-18 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT2G17850 81 / 2e-18 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT4G27700 69 / 2e-13 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT4G24750 47 / 1e-05 Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012565 [exp] 261 / 2e-87 AT5G14030 254 / 5e-87 translocon-associated protein beta (TRAPB) family protein (.1), translocon-associated protein beta (TRAPB) family protein (.2), translocon-associated protein beta (TRAPB) family protein (.3), translocon-associated protein beta (TRAPB) family protein (.4) Lus10031996 [exp] 238 / 2e-78 AT5G14030 263 / 1e-90 translocon-associated protein beta (TRAPB) family protein (.1), translocon-associated protein beta (TRAPB) family protein (.2), translocon-associated protein beta (TRAPB) family protein (.3), translocon-associated protein beta (TRAPB) family protein (.4) Lus10035166 [exp] 236 / 1e-77 AT5G14030 264 / 7e-91 translocon-associated protein beta (TRAPB) family protein (.1), translocon-associated protein beta (TRAPB) family protein (.2), translocon-associated protein beta (TRAPB) family protein (.3), translocon-associated protein beta (TRAPB) family protein (.4) Lus10012566 [exp] 222 / 7e-73 AT5G66040 129 / 1e-39 sulfurtransferase protein 16 (.1.2) Lus10005635 [exp] 207 / 3e-66 AT5G66040 144 / 1e-44 sulfurtransferase protein 16 (.1.2) Lus10028390 [exp] 149 / 3e-44 AT4G35770 182 / 3e-59 SENESCENCE ASSOCIATED GENE 1, DARK INDUCIBLE 1, ARABIDOPSIS THALIANA SENESCENCE 1, Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2.3) Lus10041843 [exp] 146 / 7e-43 AT4G35770 182 / 6e-59 SENESCENCE ASSOCIATED GENE 1, DARK INDUCIBLE 1, ARABIDOPSIS THALIANA SENESCENCE 1, Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2.3) Lus10021227 [exp] 122 / 1e-33 AT5G66040 73 / 4e-17 sulfurtransferase protein 16 (.1.2) Lus10041894 [exp] 81 / 4e-18 AT5G66170 120 / 1e-35 sulfurtransferase 18 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G061900 [exp] 217 / 8e-70 AT5G14030 210 / 6e-69 translocon-associated protein beta (TRAPB) family protein (.1), translocon-associated protein beta (TRAPB) family protein (.2), translocon-associated protein beta (TRAPB) family protein (.3), translocon-associated protein beta (TRAPB) family protein (.4) Potri.001G323400 [exp] 212 / 2e-68 AT5G14030 215 / 2e-71 translocon-associated protein beta (TRAPB) family protein (.1), translocon-associated protein beta (TRAPB) family protein (.2), translocon-associated protein beta (TRAPB) family protein (.3), translocon-associated protein beta (TRAPB) family protein (.4) Potri.002G014900 [exp] 158 / 1e-47 AT4G35770 151 / 8e-47 SENESCENCE ASSOCIATED GENE 1, DARK INDUCIBLE 1, ARABIDOPSIS THALIANA SENESCENCE 1, Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2.3) Potri.005G106400 [exp] 144 / 4e-41 AT4G35770 199 / 1e-64 SENESCENCE ASSOCIATED GENE 1, DARK INDUCIBLE 1, ARABIDOPSIS THALIANA SENESCENCE 1, Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2.3) Potri.005G111200 [exp] 103 / 4e-27 AT2G17850 162 / 5e-52 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.014G131300 [exp] 100 / 1e-25 AT2G21045 204 / 2e-68 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.015G008000 [exp] 66 / 3e-12 AT4G27700 268 / 2e-91 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.012G020700 [exp] 61 / 2e-10 AT4G27700 262 / 4e-89 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.006G100600 [exp] 43 / 0.0001 AT3G08920 238 / 6e-80 Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF05753 [flax] [poplar] TRAP_beta Translocon-associated protein beta (TRAPB) CL0031 [flax] [poplar] Phosphatase PF00581 [flax] [poplar] Rhodanese Rhodanese-like domain
Representative CDS sequence Show only first row Show all	>Lus10041525 pacid=23147027 polypeptide=Lus10041525 locus=Lus10041525.g ID=Lus10041525.BGIv1.0 annot-version=v1.0 ATGGCGATCTCACTCCCCAAGCCTTTGATCTCACTGCTGTTGGCTCTGCTGCACGTCTCTTCCGCGCTAGCTGCCTCCGATGTTCCTTTCATCGTAGCTC ACAAGAAGGCAACGCTCAACCGTCTCAAATCGGGAGCCGAACGTGTCTCCGTTTCAATCGATATCTACAATCAAGGAACCTCGACAGTGTACGATGTGAG TCTCGTTGATGATCACTGGCCCAAAGATAAGTTTGATGTTGTGAGTGGTAACATATCACAATCATGGGAAAGATTAGACGCGGGCGGTCTGCTGTCACTG GCTTTTCAACTTGAGGGAAAAGTGAAGGGCATGTTCTACAGCGCCCCTGCTGTTACTACATTCCGTGTCCCTACCAAGGCTGCTTTGCAGGAGGCATTTT CAACTCCAATCCTGCCCCTTGATATTCTGGCAGACAGAGTTGCTGAGAATAAGCTTGACTTGGTACGGAGAGACATAACAATTGTCAACTATAGGTGCGA TTTTTTCCTATGCACCTGCCCCGAAGCTTTTCTCAGTCATTTAATTTTTATCAATCGTGGTGTGTGCAAATGCAGTACAACAGCTGAGGGACGGACTCAG CTGATGACGTTTGACAAACAGCCAAGGTCGGTTGCTATCCGAGCAGCATACCAGCTCATCGGAAAAGGGCACGTGTATTTAGATGTCAGAACTAGTGAGG AGTTCAATGCAGGTCATCCAAGTGGAGCCGTGAACATTCCTTACTTACTCAACAAAGGAGCTGGCATGTCCAAGACTCCAAAGTTTCTGGAGGAAGTATC ATCTAAGTTTGACAAGCAACAGGAAATCTTAGTTGGATGTCAGAGTGGGAGCAGGTCACTCATGGCTGCAGCTGATATGAAAACTGCTGTCAGTATTGTC TGGGGATTTACAAGCGTGGTTTATGTTGCTGGTGGCTATAGCTCATGGGTTCAAAATGGACTACCCACGACAACTAAAAAACCTACTGCCTATCTGTAA
AA sequence Show only first row Show all	>Lus10041525 pacid=23147027 polypeptide=Lus10041525 locus=Lus10041525.g ID=Lus10041525.BGIv1.0 annot-version=v1.0 MAISLPKPLISLLLALLHVSSALAASDVPFIVAHKKATLNRLKSGAERVSVSIDIYNQGTSTVYDVSLVDDHWPKDKFDVVSGNISQSWERLDAGGLLSL AFQLEGKVKGMFYSAPAVTTFRVPTKAALQEAFSTPILPLDILADRVAENKLDLVRRDITIVNYRCDFFLCTCPEAFLSHLIFINRGVCKCSTTAEGRTQ LMTFDKQPRSVAIRAAYQLIGKGHVYLDVRTSEEFNAGHPSGAVNIPYLLNKGAGMSKTPKFLEEVSSKFDKQQEILVGCQSGSRSLMAAADMKTAVSIV WGFTSVVYVAGGYSSWVQNGLPTTTKKPTAYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14030			translocon-associated protein ...		Lus10041525 [exp]	0	1
AT5G11010			Pre-mRNA cleavage complex II p...		Lus10014756 [exp]	7.1	0.7277
AT1G02145		EBS4, ALG12	EMS-MUTAGENIZED BRI1\(BRASSINO...		Lus10019399 [exp]	8.4	0.7819
AT1G63110			GPI transamidase subunit PIG-U...		Lus10029590 [exp]	14.7	0.7246
AT1G18070			Translation elongation factor ...		Lus10018000 [exp]	29.6	0.6694
AT1G10510		EMB2004	embryo defective 2004, RNI-lik...		Lus10030658 [exp]	31.1	0.7069
AT2G46090			Diacylglycerol kinase family p...		Lus10036388 [exp]	34.1	0.7242
AT5G39940			FAD/NAD(P)-binding oxidoreduct...		Lus10001121 [exp]	39.9	0.7171
AT3G10530			Transducin/WD40 repeat-like su...		Lus10032289 [exp]	46.8	0.6912
AT4G00490		BAM2, BMY9	BETA-AMYLASE 9, beta-amylase 2...		Lus10030392 [exp]	48.9	0.6929
AT3G55850		LAF3 ISF2, LAF3...	LAF3 ISOFORM 2, LONG AFTER FAR...		Lus10002745 [exp]	49.2	0.7053

Compare expression of checked genes

Lus10041525 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.