Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33500 102 / 6e-24 CO COL14 B-box type zinc finger protein with CCT domain (.1.2) AT1G28050 95 / 2e-21 CO COL15 B-box type zinc finger protein with CCT domain (.1) AT2G47890 86 / 1e-18 CO COL13 B-box type zinc finger protein with CCT domain (.1.2) AT1G68190 75 / 8e-15 CO B-box zinc finger family protein (.1) AT5G48250 75 / 1e-14 CO COL10 B-box type zinc finger protein with CCT domain (.1) AT4G15250 72 / 7e-14 CO COL11 B-box type zinc finger protein with CCT domain (.1) AT3G21880 66 / 1e-11 CO COL12 B-box type zinc finger protein with CCT domain (.1) AT3G07650 66 / 1e-11 CO COL9 CONSTANS-like 9 (.1.2.3.4) AT5G15840 64 / 5e-11 CO FG, CO CONSTANS, B-box type zinc finger protein with CCT domain (.1.2) AT5G15850 62 / 1e-10 CO COL1, ATCOL1 CONSTANS-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012564 [exp] 441 / 3e-156 ND 43 / 2e-10 Lus10001806 [exp] 91 / 6e-20 AT1G28050 298 / 1e-96 B-box type zinc finger protein with CCT domain (.1) Lus10002578 [exp] 89 / 5e-19 AT1G28050 299 / 3e-97 B-box type zinc finger protein with CCT domain (.1) Lus10040900 [exp] 84 / 7e-18 AT2G47890 289 / 1e-95 B-box type zinc finger protein with CCT domain (.1.2) Lus10041096 [exp] 73 / 5e-14 AT5G48250 374 / 2e-129 B-box type zinc finger protein with CCT domain (.1) Lus10015098 [exp] 67 / 4e-12 AT3G21880 260 / 4e-84 B-box type zinc finger protein with CCT domain (.1) Lus10031584 [exp] 67 / 9e-12 AT3G21880 256 / 2e-81 B-box type zinc finger protein with CCT domain (.1) Lus10035257 [exp] 63 / 1e-10 AT1G68190 194 / 8e-59 B-box zinc finger family protein (.1) Lus10028791 [exp] 57 / 2e-09 AT1G75540 206 / 9e-66 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G323500 [exp] 160 / 8e-45 AT2G33500 213 / 2e-64 B-box type zinc finger protein with CCT domain (.1.2) Potri.001G061800 [exp] 100 / 3e-23 AT2G33500 213 / 6e-64 B-box type zinc finger protein with CCT domain (.1.2) Potri.003G166000 [exp] 96 / 2e-21 AT1G28050 204 / 2e-59 B-box type zinc finger protein with CCT domain (.1) Potri.002G208100 [exp] 85 / 4e-18 AT2G47890 276 / 4e-91 B-box type zinc finger protein with CCT domain (.1.2) Potri.014G134601 [exp] 83 / 9e-18 AT2G47890 174 / 4e-53 B-box type zinc finger protein with CCT domain (.1.2) Potri.014G170600 [exp] 71 / 3e-13 AT3G07650 328 / 3e-110 CONSTANS-like 9 (.1.2.3.4) Potri.008G125200 [exp] 66 / 1e-11 AT1G68190 144 / 8e-39 B-box zinc finger family protein (.1) Potri.018G013800 [exp] 62 / 2e-10 AT5G24930 348 / 2e-118 CONSTANS-like 4 (.1) Potri.017G039301 [exp] 60 / 1e-09 AT3G21880 288 / 2e-94 B-box type zinc finger protein with CCT domain (.1) Potri.004G161000 [exp] 58 / 1e-09 AT4G39070 192 / 6e-62 B-box zinc finger family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041526 pacid=23146936 polypeptide=Lus10041526 locus=Lus10041526.g ID=Lus10041526.BGIv1.0 annot-version=v1.0 ATGGCTAAACCATCCAGTTGCTTGGATTCTTGCGAGTTTTGCAACTCGAGAGCTGCGATTCTGCACTGTGCAGCCGATTCGGCAAACCTCTGTCTGATCT GCGACAGCCAAGTTCATTCTGCCAACGAAGTTTCTCTCAAGCACTCAAGGTCGCCGCTCTGTCAAATTTGCGGGAAACGAAGCGGCGCCTCTTTTCACTG CAGTAATAATAAGCTCGTCGTTTGCAAAGAATGCAACTGGAAGAAGCAAGAGGACATCGACGACACCGTACCTTGTCTGGTTCCGGTTGATGGGTTTGTG GGTTGCCCGCCGCCGCTTGCAATGGCTTCCGCTTTTGGATTTGATTTTAATAAAGCTCGGTTTCAAGGGTTTCCAGATTCTGGATTGGGTGACTACTCGT CTGGTTTAAGGCGAGAAGCGTATATGCAGCTGGCGGAGTTGGAATCATATCAATTGGAGATTGAGAAGAGGGAGGAAGAAGAAATGCAGCTATTACAACA GACCCCTTTTACATCTTTGTTGATGTCACCAAGTCAAGTTGGGAATAGAGAAACTACATATTGTGTTGCTGATGGGGATCTTATGTGGAGCCATAATCCT GCTTTTGAAGCTGCTCAGATATTGGATTTTCAGCTTGGGAAATCAGCAGGTTATGCCGCAGAATATCCTAATTTCAGAGCCGAGCATCACATTGATGATG CAAGTGCAACAACACGTGAGGAAGTGTCGTCTTCGTCCAGAAATAGTTGCTCCGACCAACTGTCCAAAGTGAAAGCATCCCCGGAGACTCAATACTGTTC TGGGCCTGAAGAAGAGTGGAGCGCCGAGGCCGATGCAGCTGACTGGTTAAAGGCAAAAGTTGATTTTGCGGAGAACAGAGGAAATGCCATGTTGCGGTAC AAGGAGAAAAAGAAGAATCGAAGGTTAATGCTTTTGTCCATTATGTTCCTTCCAGCTTCGATGGTTTGTTCATTTTTATTGAGGCGTGATTATCGAAATG GAAAAGCAGGTACGATAAGCGAATTCGATATGAGTCCAGGAAGACCAGAGCTGATTCAAGAAAGCGAGTCCAAGGTCGGTTTGCAAAGACTAGTGAGAAC TGATGATGCATAA
AA sequence Show only first row Show all	>Lus10041526 pacid=23146936 polypeptide=Lus10041526 locus=Lus10041526.g ID=Lus10041526.BGIv1.0 annot-version=v1.0 MAKPSSCLDSCEFCNSRAAILHCAADSANLCLICDSQVHSANEVSLKHSRSPLCQICGKRSGASFHCSNNKLVVCKECNWKKQEDIDDTVPCLVPVDGFV GCPPPLAMASAFGFDFNKARFQGFPDSGLGDYSSGLRREAYMQLAELESYQLEIEKREEEEMQLLQQTPFTSLLMSPSQVGNRETTYCVADGDLMWSHNP AFEAAQILDFQLGKSAGYAAEYPNFRAEHHIDDASATTREEVSSSSRNSCSDQLSKVKASPETQYCSGPEEEWSAEADAADWLKAKVDFAENRGNAMLRY KEKKKNRRLMLLSIMFLPASMVCSFLLRRDYRNGKAGTISEFDMSPGRPELIQESESKVGLQRLVRTDDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33500	CO	COL14	B-box type zinc finger protein...		Lus10041526 [exp]	0	1
AT4G32285			ENTH/ANTH/VHS superfamily prot...		Lus10043260 [exp]	1.4	0.8290
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10043039 [exp]	6.5	0.8154
AT2G18170		ATMPK7	MAP kinase 7 (.1)		Lus10014283 [exp]	8.5	0.8217
AT2G25430			epsin N-terminal homology (ENT...		Lus10019402 [exp]	12.8	0.8029
AT3G07940			Calcium-dependent ARF-type GTP...		Lus10016347 [exp]	13.0	0.7435
AT4G37300		MEE59	maternal effect embryo arrest ...		Lus10040706 [exp]	13.8	0.7910
AT5G04050			RNA-directed DNA polymerase (r...		Lus10036278 [exp]	17.1	0.7679
AT4G32480			Protein of unknown function (D...		Lus10018603 [exp]	20.5	0.7260
AT5G09690		MRS2-7, ATMGT7	ARABIDOPSIS THALIANA MAGNESIUM...		Lus10022218 [exp]	21.6	0.7415
AT4G37640		ACA2	calcium ATPase 2 (.1)		Lus10019300 [exp]	22.4	0.7528

Compare expression of checked genes

Lus10041526 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.