Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14020 471 / 7e-166 Endosomal targeting BRO1-like domain-containing protein (.1) AT1G73390 340 / 5e-114 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) AT1G17940 323 / 9e-108 Endosomal targeting BRO1-like domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012563 [exp] 773 / 0 AT5G14020 486 / 9e-172 Endosomal targeting BRO1-like domain-containing protein (.1) Lus10031997 [exp] 657 / 0 AT5G14020 504 / 9e-179 Endosomal targeting BRO1-like domain-containing protein (.1) Lus10035167 [exp] 654 / 0 AT5G14020 497 / 4e-176 Endosomal targeting BRO1-like domain-containing protein (.1) Lus10031881 [exp] 354 / 2e-119 AT1G73390 704 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) Lus10031313 [exp] 344 / 1e-115 AT1G73390 690 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) Lus10042289 [exp] 341 / 2e-114 AT1G73390 686 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) Lus10026368 [exp] 289 / 6e-94 AT1G73390 613 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G062000 [exp] 622 / 0 AT5G14020 524 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1) Potri.001G323600 [exp] 608 / 0 AT5G14020 521 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1) Potri.004G067400 [exp] 338 / 2e-113 AT1G73390 647 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) Potri.017G154200 [exp] 320 / 4e-107 AT1G73390 563 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03097 [flax] [poplar] BRO1 BRO1-like domain
Representative CDS sequence Show only first row Show all	>Lus10041527 pacid=23146734 polypeptide=Lus10041527 locus=Lus10041527.g ID=Lus10041527.BGIv1.0 annot-version=v1.0 ATGGGGTGCACTGCTTCAGTTTATGCAAAGAAGAAGAAGACAACTATACCAGAAGCTGTAATACATGTTCCTTCACTGAGAATTCCAGCCCAGTCTGATC TTCAAAGAGCTCTTAAAGGGTTAGTCCCTCAGGATCTTCTAGATCGGCTATCGAGGCTTCGAAGTCAGATTGTGCTGATTGCTGGGGATACAGATGGATC TGCTATAATAGAACTGAAGAGAACATTGGAAGACTACTTGCCTATTGTCATTGGCCTTACTAAGAAAGAATATGGTCTTGAGGATTTGGTCGAGTTCAAG TGGAAGAACTTGGAGGATGGCAGACAAGAAACCAGTGTATCAAACTGCTGGTTTGAATTGCTATCAGTTGTTCACTTGTTGGCAATGCTAACTTTGTCTG AAGCCAACTCATTAATGATCCCAAAGGATCATTCTGGTTCAGGAGTAAGGGTTGTATCTTCAGACTGTAAGAGGGAAGCTGTCGATTTACTGCTGAAGGC CTCAGGGTACCTTGAATGTTGTATCCATGACGTATCTACACATATACCACCAGAAACCAAGAAAAGTTTACCAAAAGACCTGCAAGATGGTGTGCTGGAT GCTTTGTCAATTCAAGCTCTAGGCCAGGGAACAGAAATCCAGCTGGGTTTAGCTGTTGAATGCCAGAAAGCTAGTTTGCCAGTGAAAAGGAGGCTAGCAT GTGAACAGCTGATCTATTTCAGTCAGGCTTATCAGAGCTTATCAGGAGCAGACACTAGCAACGGGTATGGAAAGAAGAATCTATGCTTTATCAAGTGGAA ATTTCTTGAAGCAAAGGCTGCAGCTTATTACTACCACGGTCTGATTCTCGACCAAGGGAATAAACCAGCATGCCATGTTAGTGCAGTCTGCTGTTTCGTG GCTGCGGAAGGACTTTTGACCGAGAGCAAGCGTGCATGCTTAAGTTTCAGCCTTTCAGCTCCAGTTACCAGATCTCCACCACCATGGGGAGCTATGAAGC ATTTGCAGAAGAAAATCCCTGAAGTTGCATCAAGGAAGGCTGAAATGTATGGTTACCTATTGGATGAAGAAAAGGGTTTACAAGCATTGCCAGAGCTACC GGATTTTCAGCTGTCTTTAAGGCCAGATGATTATACACTTCCGGAAGGGGATTCAGCTTGGGACAGTACGAGCTGGGAAATCCAGAGGCAGCCCTTAAAA GAACATGTTGAAGACAATTGA
AA sequence Show only first row Show all	>Lus10041527 pacid=23146734 polypeptide=Lus10041527 locus=Lus10041527.g ID=Lus10041527.BGIv1.0 annot-version=v1.0 MGCTASVYAKKKKTTIPEAVIHVPSLRIPAQSDLQRALKGLVPQDLLDRLSRLRSQIVLIAGDTDGSAIIELKRTLEDYLPIVIGLTKKEYGLEDLVEFK WKNLEDGRQETSVSNCWFELLSVVHLLAMLTLSEANSLMIPKDHSGSGVRVVSSDCKREAVDLLLKASGYLECCIHDVSTHIPPETKKSLPKDLQDGVLD ALSIQALGQGTEIQLGLAVECQKASLPVKRRLACEQLIYFSQAYQSLSGADTSNGYGKKNLCFIKWKFLEAKAAAYYYHGLILDQGNKPACHVSAVCCFV AAEGLLTESKRACLSFSLSAPVTRSPPPWGAMKHLQKKIPEVASRKAEMYGYLLDEEKGLQALPELPDFQLSLRPDDYTLPEGDSAWDSTSWEIQRQPLK EHVEDN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14020			Endosomal targeting BRO1-like ...		Lus10041527 [exp]	0	1
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10001798 [exp]	4.7	0.8445
AT2G03350			Protein of unknown function, D...		Lus10037126 [exp]	5.0	0.9136
AT5G43080		CYCA3;1	Cyclin A3;1 (.1)		Lus10013886 [exp]	5.2	0.8769
AT1G11000		ATMLO4, MLO4	MILDEW RESISTANCE LOCUS O 4, S...		Lus10001370 [exp]	7.9	0.8605
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10004348 [exp]	11.0	0.8836
AT4G32000			Protein kinase superfamily pro...		Lus10041026 [exp]	11.5	0.8642
AT1G24160			unknown protein		Lus10002952 [exp]	12.7	0.8341
AT3G20300			Protein of unknown function (D...		Lus10009722 [exp]	13.6	0.8759
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Lus10008603 [exp]	18.4	0.8749
AT5G15140			Galactose mutarotase-like supe...		Lus10030673 [exp]	21.7	0.8622

Compare expression of checked genes

Lus10041527 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.