Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14000 115 / 8e-32 NAC ANAC084 NAC domain containing protein 84 (.1) AT5G13180 114 / 8e-31 NAC VNDIP2, ANAC083, VNI2 VND-interacting 2, NAC domain containing protein 83 (.1) AT2G33480 114 / 1e-30 NAC ANAC041 NAC domain containing protein 41 (.1.2) AT5G53950 105 / 2e-26 NAC ATCUC2, CUC2, ANAC098 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT5G39610 103 / 2e-26 NAC ORE1, AtNAC2, ANAC092, ATNAC6 ORESARA 1, NAC domain containing protein 2, Arabidopsis NAC domain containing protein 92, NAC domain containing protein 6 (.1) AT5G07680 103 / 5e-26 NAC ANAC079, ATNAC4, ANAC080 Arabidopsis NAC domain containing protein 79, NAC domain containing protein 80 (.1.2) AT3G04060 103 / 9e-26 NAC ANAC046 NAC domain containing protein 46 (.1) AT1G61110 102 / 1e-25 NAC ANAC025 NAC domain containing protein 25 (.1) AT5G61430 102 / 2e-25 NAC ANAC100, ATNAC5 NAC domain containing protein 100 (.1) AT3G15510 100 / 2e-24 NAC ATNAC2, ANAC056, NARS1 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012557 [exp] 341 / 2e-119 AT5G14000 122 / 4e-34 NAC domain containing protein 84 (.1) Lus10032004 [exp] 207 / 9e-67 AT5G14000 113 / 2e-30 NAC domain containing protein 84 (.1) Lus10035174 [exp] 194 / 9e-62 AT5G14000 115 / 2e-31 NAC domain containing protein 84 (.1) Lus10002581 [exp] 122 / 2e-33 AT5G13180 273 / 6e-93 VND-interacting 2, NAC domain containing protein 83 (.1) Lus10001809 [exp] 117 / 5e-32 AT5G13180 271 / 6e-92 VND-interacting 2, NAC domain containing protein 83 (.1) Lus10006547 [exp] 111 / 2e-28 AT3G04070 337 / 4e-114 NAC domain containing protein 47 (.1.2) Lus10011215 [exp] 107 / 4e-27 AT1G61110 305 / 1e-102 NAC domain containing protein 25 (.1) Lus10018469 [exp] 107 / 6e-27 AT1G61110 301 / 5e-101 NAC domain containing protein 25 (.1) Lus10003269 [exp] 106 / 1e-26 AT3G04070 324 / 3e-109 NAC domain containing protein 47 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G325100 [exp] 171 / 7e-53 AT5G13180 163 / 2e-49 VND-interacting 2, NAC domain containing protein 83 (.1) Potri.017G063300 [exp] 158 / 8e-48 AT5G13180 150 / 9e-45 VND-interacting 2, NAC domain containing protein 83 (.1) Potri.015G102100 [exp] 129 / 2e-36 AT5G13180 232 / 8e-77 VND-interacting 2, NAC domain containing protein 83 (.1) Potri.012G103500 [exp] 129 / 2e-36 AT5G13180 229 / 2e-75 VND-interacting 2, NAC domain containing protein 83 (.1) Potri.003G166500 [exp] 119 / 1e-32 AT5G13180 310 / 4e-107 VND-interacting 2, NAC domain containing protein 83 (.1) Potri.001G061200 [exp] 117 / 7e-32 AT5G13180 310 / 6e-107 VND-interacting 2, NAC domain containing protein 83 (.1) Potri.019G031600 [exp] 110 / 6e-28 AT5G18270 328 / 6e-111 Arabidopsis NAC domain containing protein 87 (.1.2) Potri.019G031400 [exp] 105 / 2e-26 AT3G04070 332 / 1e-112 NAC domain containing protein 47 (.1.2) Potri.012G001400 [exp] 104 / 3e-26 AT5G61430 448 / 1e-158 NAC domain containing protein 100 (.1) Potri.015G020000 [exp] 104 / 4e-26 AT5G61430 446 / 1e-157 NAC domain containing protein 100 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10041534 pacid=23146777 polypeptide=Lus10041534 locus=Lus10041534.g ID=Lus10041534.BGIv1.0 annot-version=v1.0 ATGGAGGCGAAACAAAATATGGTTGTGAATGGGGGAGGGGGGATCAAAGTACTGCCAATTGGGGTCAGATTCCGCCCTACAGATGAAGAGCTCATCGTTC ATTACCTGCGACGTAAGGTGTTGGGGCTCCCCTTGCCGGCTTCTGTCATCTCTGAGCTCGACGTTTTCCACACCCATCCTTGCTCCCTCCCAGGTAACTC TTCTTGCTGGGAGAAAAGGTACTTCTTCTGCAAGAAAGAGGGAAATGTGGCAGGCGCCGGAAACAGAGGAGGAGGAGTTAGTGGTTGTGGTGGAGGTTAC TGGAAGCATACCAGGAAAGCCAGGCATATCGTGTCTTCTTCTTGTAACAACCAATTAGTTGGGATGAGGACTAGTCTGGTTTTCCGCAAGCAGAATGCCT CTCATCATTCAAATACCAAGTGGGTGATGCACGAATTTTGCCTTGTGGGATTGGCCACCATCCCCTTCACGAACCAGGTGGCGAAGGTCCAATTGGGAGA CTGGGTGGTTTGCAGTGTGTTCCAGAAGAAGAAAAGGCATAGTAATAGCAACATGAAGAAACCCCCTAATCCAATTGAGTTTAGAATGGAGGAGTTGTCT GATAGAGGGCCAGAGGAAGAGGAGGAGCCTGGTTCACCATGCTCAAGCGGGGTCACTGAGCTTTCTAATTCTACCAGTTATTCATCAAATGGGGTAGATG GTGAGGGAGATATCAACTCATTTAATGTTAGCTTCTCTTCTTAG
AA sequence Show only first row Show all	>Lus10041534 pacid=23146777 polypeptide=Lus10041534 locus=Lus10041534.g ID=Lus10041534.BGIv1.0 annot-version=v1.0 MEAKQNMVVNGGGGIKVLPIGVRFRPTDEELIVHYLRRKVLGLPLPASVISELDVFHTHPCSLPGNSSCWEKRYFFCKKEGNVAGAGNRGGGVSGCGGGY WKHTRKARHIVSSSCNNQLVGMRTSLVFRKQNASHHSNTKWVMHEFCLVGLATIPFTNQVAKVQLGDWVVCSVFQKKKRHSNSNMKKPPNPIEFRMEELS DRGPEEEEEPGSPCSSGVTELSNSTSYSSNGVDGEGDINSFNVSFSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33480	NAC	ANAC041	NAC domain containing protein ...		Lus10041534 [exp]	0	1
AT2G27310			F-box family protein (.1)		Lus10013309 [exp]	2.4	0.9166
AT4G24430			Rhamnogalacturonate lyase fami...		Lus10005978 [exp]	5.5	0.8724
AT5G39670			Calcium-binding EF-hand family...		Lus10012199 [exp]	6.8	0.8503
					Lus10006091 [exp]	7.2	0.9053
AT1G77450	NAC	ANAC032	NAC domain containing protein ...		Lus10031937 [exp]	8.5	0.8775
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10020331 [exp]	8.7	0.9050
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10031484 [exp]	11.8	0.8663
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Lus10026625 [exp]	12.7	0.8585
AT3G49210			O-acyltransferase (WSD1-like) ...		Lus10033680 [exp]	13.2	0.8837
AT1G10280			Core-2/I-branching beta-1,6-N-...		Lus10040972 [exp]	13.3	0.8539

Compare expression of checked genes

Lus10041534 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.