Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02040 204 / 1e-65 AtGDPD1, SRG3 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1) AT5G41080 192 / 3e-61 AtGDPD2 glycerophosphodiester phosphodiesterase 2, PLC-like phosphodiesterases superfamily protein (.1.2) AT5G43300 157 / 3e-47 AtGDPD3 glycerophosphodiester phosphodiesterase 3, PLC-like phosphodiesterases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012556 [exp] 232 / 4e-76 AT3G02040 499 / 5e-178 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1) Lus10035175 [exp] 229 / 4e-75 AT3G02040 494 / 7e-176 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1) Lus10032006 [exp] 229 / 4e-75 AT3G02040 489 / 3e-174 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1) Lus10011337 [exp] 177 / 3e-55 AT5G43300 423 / 9e-149 glycerophosphodiester phosphodiesterase 3, PLC-like phosphodiesterases superfamily protein (.1) Lus10002582 [exp] 175 / 3e-54 AT5G43300 440 / 2e-154 glycerophosphodiester phosphodiesterase 3, PLC-like phosphodiesterases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G063500 [exp] 214 / 2e-69 AT3G02040 505 / 1e-180 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1) Potri.001G325200 [exp] 209 / 2e-67 AT3G02040 509 / 0.0 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1) Potri.001G061100 [exp] 187 / 5e-59 AT3G02040 442 / 1e-155 Glycerophosphodiester phosphodiesterase 1, senescence-related gene 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0384 [flax] [poplar] PLC PF03009 [flax] [poplar] GDPD Glycerophosphoryl diester phosphodiesterase family
Representative CDS sequence Show only first row Show all	>Lus10041535 pacid=23146952 polypeptide=Lus10041535 locus=Lus10041535.g ID=Lus10041535.BGIv1.0 annot-version=v1.0 ATGTTCTCTTCGTTTCAGCCCGACGCTGCCTTGCTCGTCAGGAAGTTTCAGAGCGTGTACCCTGTCTATTTCCTGACGGATGCAGGGTCGGAGACATTTT ACGATTCGAGGAGGAATTCGCTGGAGGAGGCGATTAAGGTGTGTTTGGAAGGCGGGTTGCAAGGGATTGTGTCGGAGGTGAGAGGAGTTTTCAGGAATCC GGCTGCCGTCGGGAAGATTAAGGAGTCTAACCTTTCTTTGCTTACGTATGGAAAGTTGAATAACGTGGCGGAAGCGGCGTATATGCAGCACTTGATGGGG GTAGATGGGGTGATTGTTGATCTCGTGGCGGAGATTACTGATGCAGTCGGTGACATGATTAAGCCGCCGGAAGAAGTTGAGGGGAAGTTGGTGGGAGGAG GTGAAATGGAGGCCACAGTTTTCTGCAAAGGATTGAAACCTGAGTTAATACAACAACAACAGTGA
AA sequence Show only first row Show all	>Lus10041535 pacid=23146952 polypeptide=Lus10041535 locus=Lus10041535.g ID=Lus10041535.BGIv1.0 annot-version=v1.0 MFSSFQPDAALLVRKFQSVYPVYFLTDAGSETFYDSRRNSLEEAIKVCLEGGLQGIVSEVRGVFRNPAAVGKIKESNLSLLTYGKLNNVAEAAYMQHLMG VDGVIVDLVAEITDAVGDMIKPPEEVEGKLVGGGEMEATVFCKGLKPELIQQQQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Lus10041535 [exp]	0	1
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10038923 [exp]	2.6	0.9034
AT5G43350		PHT1;1, ATPT1	ARABIDOPSIS THALIANA PHOSPHATE...		Lus10021191 [exp]	4.2	0.8898
AT4G09570		CPK4, ATCPK4	calcium-dependent protein kina...		Lus10009427 [exp]	6.0	0.8930
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Lus10019415 [exp]	7.5	0.8794
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Lus10030095 [exp]	7.7	0.8756
AT2G26660		ATSPX2	ARABIDOPSIS THALIANA SPX DOMAI...		Lus10002908 [exp]	9.4	0.8565
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Lus10043272 [exp]	9.9	0.8615
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10027210 [exp]	10.0	0.8514
AT5G20410		ATMGD2, MGD2	ARABIDOPSIS THALIANA MONOGALAC...		Lus10016359 [exp]	13.7	0.8290
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Lus10012556 [exp]	15.3	0.8043

Compare expression of checked genes

Lus10041535 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.