Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13990 598 / 0 ATEXO70C2 exocyst subunit exo70 family protein C2 (.1) AT5G13150 540 / 0 ATEXO70C1 exocyst subunit exo70 family protein C1 (.1) AT5G58430 335 / 1e-104 ATEXO70B1 exocyst subunit exo70 family protein B1 (.1) AT1G72470 325 / 7e-101 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1) AT3G14090 322 / 1e-99 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1) AT5G50380 315 / 2e-96 ATEXO70F1 exocyst subunit exo70 family protein F1 (.1) AT1G54090 305 / 1e-93 ATEXO70D2 exocyst subunit exo70 family protein D2 (.1) AT1G07000 279 / 8e-84 ATEXO70B2 exocyst subunit exo70 family protein B2 (.1) AT5G03540 272 / 3e-82 ATEXO70A1 exocyst subunit exo70 family protein A1 (.1.2.3) AT5G52340 271 / 9e-81 ATEXO70A2 exocyst subunit exo70 family protein A2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012555 [exp] 1338 / 0 AT5G13990 608 / 0.0 exocyst subunit exo70 family protein C2 (.1) Lus10015757 [exp] 518 / 1e-174 AT5G13150 585 / 0.0 exocyst subunit exo70 family protein C1 (.1) Lus10011334 [exp] 475 / 2e-158 AT5G13150 541 / 0.0 exocyst subunit exo70 family protein C1 (.1) Lus10003142 [exp] 465 / 9e-155 AT5G13150 548 / 0.0 exocyst subunit exo70 family protein C1 (.1) Lus10037048 [exp] 366 / 3e-114 AT5G13150 426 / 5e-139 exocyst subunit exo70 family protein C1 (.1) Lus10008126 [exp] 340 / 4e-106 AT1G72470 862 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10016764 [exp] 337 / 3e-105 AT5G50380 807 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10013163 [exp] 327 / 6e-104 AT1G72470 740 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10022459 [exp] 332 / 1e-103 AT5G50380 749 / 0.0 exocyst subunit exo70 family protein F1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G325600 [exp] 737 / 0 AT5G13990 662 / 0.0 exocyst subunit exo70 family protein C2 (.1) Potri.017G068000 [exp] 722 / 0 AT5G13990 640 / 0.0 exocyst subunit exo70 family protein C2 (.1) Potri.001G060700 [exp] 566 / 0 AT5G13150 658 / 0.0 exocyst subunit exo70 family protein C1 (.1) Potri.012G097100 [exp] 339 / 8e-106 AT5G50380 754 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.001G166400 [exp] 338 / 9e-106 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.015G094800 [exp] 330 / 1e-102 AT5G50380 785 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.013G152900 [exp] 329 / 2e-102 AT5G58430 781 / 0.0 exocyst subunit exo70 family protein B1 (.1) Potri.003G068700 [exp] 325 / 5e-101 AT1G72470 810 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.019G124000 [exp] 318 / 4e-98 AT5G58430 726 / 0.0 exocyst subunit exo70 family protein B1 (.1) Potri.017G093966 [exp] 290 / 1e-87 AT3G29400 597 / 0.0 exocyst subunit exo70 family protein E1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF03081 [flax] [poplar] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Lus10041536 pacid=23147001 polypeptide=Lus10041536 locus=Lus10041536.g ID=Lus10041536.BGIv1.0 annot-version=v1.0 ATGGAATCAGGAGGTAAAAACAACGTAAATCATGATCAGGAAGATGATCAAGCACATTCTGACACTAACAAACCCGAAGATACAAAAGATGACCCTCCTC CTCCTCCCGATGATGCTCCCGATCCTCCAATTTCCGATTCGATCTCTAACCTACCGCCCAGTAACCTTATGGACTCCGAAAGAGATCCTGACACCAAACT GACGGAACAAAACGACGATATTTCCTCGCCTCCTCATCCTGAAGAAATCCACATAACTCTGGAAATACTTTCCCCTGATATCGATCAATTCTTGTCCTCT CTACCCGAAAGAATGATAGAATTCTATCAAAAAACATCCACCCAACAAAACCAAGAAGTCATTGTTGATGAAGGAGATGGAGATAAAAATAAGAATCAAG ATCTCACTAATCAGGGCGAGAAAGCTATTGGTGATGAATTCAAAGATGGAGAAAAGAAGTCTGAAGATTCCGAACCTGAAAAGGAAAATCAGAATGAGAA TGAGAATGAAAATAAAAATGAAAATGAGAAGGAGGATGTGGATAAGAAGACAGAGAGCGAGAAGAAGATCTCTTCAATTGAGATGCCAGACTTCATCAAC AAGTTCGTGGATCTTGTCGAGGCCAAGATAACCGAACGCGATTCAGATGATCAAGAGGATAGCAAAGGAGGTAAATGGTGTAAATCCCCTGATCATGACT CAGCATTTCTGGTGATGGTTAGTCGCCTCACCAGGTTGAATACTTCCTTCAGTGGCTACTTCAAATCAGATCCAGTTCACGCCCCACTTGCCAGCCGAAT CGGATTTATCCATCACAAAGCGATGGTATACTTGGAGGATGAGTTCAGGTTCCTCCTTGAAGAACAGTCGAAGCCCATCGAACCTGATTCGCCTGCTAAA GGTGGAAATCCAGAAGGAGGCGAGGAATATCATAGCCCATTGCCAGAATCAGAATCCAAAAAGAATGATCAAGAGGATCAATACGAATCTCCTTACCCTG GCTACCAGGAGGAAGTGGTGTCCAATTTGAGGAAAATTGGGGAAGCTATGATCATCGCCGGGTATGAATCCGAGTGCTGCCAGGTCTACATGATAATCCG ACGACACGCAATCGACGAATGTCTGGTCCAATCGGGATTCGAGAAGATCAGCATCGATGAGCTGCATAAGATGGCGTGGGAGAGTTTGGAAAAGGAAATC CCGATCATGACAGCAATCATGAAGGAATGCGCCACCATTCATTTCCCCAAAGAGCACAAACTAGTCCATTCTATTTTCCCCTCCGGCAACAAATCATCGC CATCGTCAGCCTTGTCCTCCTCCGCACTCTTCACAAACCTCGCGAGAGGAGTACTGATCCAGTTCCTCAACTTCGCAGAAGGCGTTGCCATGTCCAAGCG CTCTACGGAGAAGCTCTTCAAGTTCCTCGACATGTACGAGACACTGCGGGACGGATTTGCGGCAATCGAGGGTTTGTTTCCTGAAGAACCAGGGAACGAG CTGAAATCGGAAGCCGCAACGGTAAAGGGAAGAATCGGAGAAGCTGCAATCAACATATTCAACGATTTGGAGAACTCGATCAAGAACGACCGCGGGAAGA CTCCGGTACCTGGAGGGGCCGTACATCCCTTGACTCGCTACACGATGAATTACTTGAAATACGCGTTCGAGTACAAGGCTACCTTGGAGAATGTGTTCAG GGACCATTCGAAAATCGAGCGGGCCGATTCCACGAGCCGGCCTCGATTCGAAGGGGATTCTTCGAGGCAAGATCAAAATAACAACAACAACTCCCCTTTT GCAAGCCAATTGGCGAGGATCATGGACTTGTTAGATACGAATCTGGAGGAGAAATCGCAGCTGTACAGGGACGTGTCACTCTGCTGCATCTTCATGATGA ACAACGGTAGATACATCTTGCAGAAGATAAAAGGCTCGCCGGAGATCCACGGCGTGATGGGGGACTCCTGGTGTCGGAGGAAGTCGTCGGATCTGAGAAA TTTCCACAAGGGGTACCAGAGGGAGACGTGGAGTAAGGTGTTAGGATGTTTGGCGCACGAAGGGATTCAAGTGCACGGGAAAGTAGCAAAGCCGGTGCTG AAGGAGCGGTTCAAGAACTTCAACCTGATGTTTGACGAGATCCACAGGACGCAAAGTGTTTGGGTTGTGAGCGACGAGCAGCTACAGTCGGAGCTGCGGA TTTCGATATCGGCGGTGGTGATTCCGGCGTACAGGGGGTTTATGGGGAGGTTTTCTCAGTATTTTACGCCAGGGAGACAGTATGAGAAGTATATAAAGTT TCAGCCGGAGGATGTAGAGAATTATATAGAGGAGCTGTTTGATGGAAACACAGGTTCCATGGCCAGAAAGAGACCATAA
AA sequence Show only first row Show all	>Lus10041536 pacid=23147001 polypeptide=Lus10041536 locus=Lus10041536.g ID=Lus10041536.BGIv1.0 annot-version=v1.0 MESGGKNNVNHDQEDDQAHSDTNKPEDTKDDPPPPPDDAPDPPISDSISNLPPSNLMDSERDPDTKLTEQNDDISSPPHPEEIHITLEILSPDIDQFLSS LPERMIEFYQKTSTQQNQEVIVDEGDGDKNKNQDLTNQGEKAIGDEFKDGEKKSEDSEPEKENQNENENENKNENEKEDVDKKTESEKKISSIEMPDFIN KFVDLVEAKITERDSDDQEDSKGGKWCKSPDHDSAFLVMVSRLTRLNTSFSGYFKSDPVHAPLASRIGFIHHKAMVYLEDEFRFLLEEQSKPIEPDSPAK GGNPEGGEEYHSPLPESESKKNDQEDQYESPYPGYQEEVVSNLRKIGEAMIIAGYESECCQVYMIIRRHAIDECLVQSGFEKISIDELHKMAWESLEKEI PIMTAIMKECATIHFPKEHKLVHSIFPSGNKSSPSSALSSSALFTNLARGVLIQFLNFAEGVAMSKRSTEKLFKFLDMYETLRDGFAAIEGLFPEEPGNE LKSEAATVKGRIGEAAINIFNDLENSIKNDRGKTPVPGGAVHPLTRYTMNYLKYAFEYKATLENVFRDHSKIERADSTSRPRFEGDSSRQDQNNNNNSPF ASQLARIMDLLDTNLEEKSQLYRDVSLCCIFMMNNGRYILQKIKGSPEIHGVMGDSWCRRKSSDLRNFHKGYQRETWSKVLGCLAHEGIQVHGKVAKPVL KERFKNFNLMFDEIHRTQSVWVVSDEQLQSELRISISAVVIPAYRGFMGRFSQYFTPGRQYEKYIKFQPEDVENYIEELFDGNTGSMARKRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13990		ATEXO70C2	exocyst subunit exo70 family p...		Lus10041536 [exp]	0	1
AT5G26170	WRKY	ATWRKY50, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10036624 [exp]	1.4	0.9692
AT4G09900		ATMES12	ARABIDOPSIS THALIANA METHYL ES...		Lus10009489 [exp]	2.8	0.9313
AT2G39440			unknown protein		Lus10040607 [exp]	4.2	0.9411
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10020330 [exp]	4.2	0.9617
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Lus10007210 [exp]	7.9	0.8748
AT1G25480			Aluminium activated malate tra...		Lus10021694 [exp]	8.0	0.9084
AT5G37730			unknown protein		Lus10033584 [exp]	8.9	0.9282
					Lus10034352 [exp]	10.0	0.9385
					Lus10035062 [exp]	10.4	0.9396
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006303 [exp]	11.4	0.9130

Compare expression of checked genes

Lus10041536 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.