Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51160 331 / 8e-110 Ankyrin repeat family protein (.1) AT4G10720 176 / 2e-50 Ankyrin repeat family protein (.1.2) AT5G15500 174 / 2e-49 Ankyrin repeat family protein (.1.2) AT1G14480 169 / 1e-47 Ankyrin repeat family protein (.1.2) AT1G14500 160 / 2e-44 Ankyrin repeat family protein (.1) AT5G54610 154 / 4e-42 ANK ankyrin (.1) AT5G54620 152 / 2e-41 Ankyrin repeat family protein (.1) AT2G24600 100 / 3e-22 Ankyrin repeat family protein (.1.2.3.4) AT5G60070 99 / 6e-22 ankyrin repeat family protein (.1) AT1G10340 97 / 2e-21 Ankyrin repeat family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034256 [exp] 145 / 3e-38 AT5G51160 140 / 2e-36 Ankyrin repeat family protein (.1) Lus10037894 [exp] 145 / 6e-38 AT1G10340 298 / 3e-93 Ankyrin repeat family protein (.1.2) Lus10029007 [exp] 136 / 5e-35 AT5G51160 128 / 4e-32 Ankyrin repeat family protein (.1) Lus10034255 [exp] 132 / 1e-33 AT5G51160 125 / 4e-31 Ankyrin repeat family protein (.1) Lus10038609 [exp] 128 / 1e-33 AT1G10340 142 / 2e-38 Ankyrin repeat family protein (.1.2) Lus10029008 [exp] 123 / 1e-30 AT5G51160 121 / 8e-30 Ankyrin repeat family protein (.1) Lus10029089 [exp] 114 / 2e-28 AT5G51160 104 / 4e-25 Ankyrin repeat family protein (.1) Lus10024844 [exp] 108 / 3e-25 AT1G34050 353 / 4e-114 Ankyrin repeat family protein (.1) Lus10034579 [exp] 93 / 5e-20 AT2G01680 768 / 0.0 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G113800 [exp] 431 / 5e-149 AT5G51160 351 / 1e-117 Ankyrin repeat family protein (.1) Potri.015G111300 [exp] 424 / 3e-146 AT5G51160 338 / 2e-112 Ankyrin repeat family protein (.1) Potri.014G051100 [exp] 256 / 2e-80 AT5G51160 209 / 3e-62 Ankyrin repeat family protein (.1) Potri.006G223800 [exp] 184 / 7e-53 AT5G51160 176 / 1e-49 Ankyrin repeat family protein (.1) Potri.013G017254 [exp] 170 / 7e-48 AT5G51160 151 / 7e-41 Ankyrin repeat family protein (.1) Potri.006G223700 [exp] 169 / 4e-47 AT5G15500 145 / 3e-38 Ankyrin repeat family protein (.1.2) Potri.018G042200 [exp] 157 / 2e-42 AT1G10340 268 / 6e-82 Ankyrin repeat family protein (.1.2) Potri.018G050600 [exp] 115 / 4e-30 AT5G15500 91 / 1e-21 Ankyrin repeat family protein (.1.2) Potri.001G187600 [exp] 102 / 4e-23 AT5G50140 280 / 3e-86 Ankyrin repeat family protein (.1) Potri.014G050800 [exp] 92 / 2e-21 AT5G51160 87 / 5e-20 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10041537 pacid=23146998 polypeptide=Lus10041537 locus=Lus10041537.g ID=Lus10041537.BGIv1.0 annot-version=v1.0 ATGGACCTGAAATTGATCGAAGCTTGTCATTCCGGAAACATCAACATCCTGCACCAACTCCTCCGATCAAATCCATTTCTCCTCGACCACCTCACAACAG CCAATCCGTTACACGTGGCAGCAATCGCCGGACACGTTGACTTCACCAAAGAGATCCTGAAACTGAAGCCAGGGCTGGGGATAGAAGTGAACCAAGATGG ATTGACAGCCCTGCACTATGCGGCGGCGAATGGGCAGCTTGAGATTGTGAGGGAGTTGGTCAAAGTCAACAAGGATTCGTGTCGGCTTCAAGGAAGAGAC GGCAAGACTCCTCTTCACTCCGCAGCCGTCAAAGGCAGAGCAGATGTCATAAAGGAGATGCTGGTGAGTTGTCCTGATTGTATGCGTGATGTGACTGTTC AAAGAGAGACTGCTCTGCATCTGGCTATTAGGAACTGTCAGTTTGGAGCAATTAAGGTTTTAGTTGATCATTTGATGACGTCTGAGATGAATAAGACAAG GGTTCTGAATGCCAAGGATGAGCAGGGGAATACAGTTCTGCATCTTGCATCCTGGAAGAAACACAGACCTGTGATTGAACTGCTGCTGGGGAATGAGATG GTTAGTTCTTCAGGCACAGTACTGGAAATGGAAGTAAATGCAAAGAACAACGCTGGCCTTACTGCTCTAGACTTGATGCTTATATTCCCAAGCGAAGCAG GCGACAGAGAAATCATAGAGATACTTGTAGCAGCCGGAGCTGTAAGGAACCAAGAGCCTCCACATTTCCAACAGCAGCAGCAGGAACAGGAGCTCCCCTC GTCTATGTCAGCCAAAGACATGGAGGAATACTTTAAATTCAAGAAAGGGAGAGACTCTCCAAGTGAAGCCAGGAGTGCACTATTGGTCATAGCGGTTTTA GTTGCCACAGCCACATTTCAACTCGGAATCAACCCTCCTGGAGGAGTTTGGCAAGACACCTACGAGAAATCACACAATGCAGGGGAGTCGATCATGGGTA CGAGTTATGGAGTTGCATTCTCGATTGTTGCGGTTTTCAACACGATTGGATTCTCGACGGCTCTGCTGATGATCAACGTCCTTACGACTAGGTTCCCCTT GCAACTTGAGCTCCAAATATGCATGGTGGCTATGTATGTTACGTATAACACATCTATCATCAATTTATCCCCTGACGGTGTGCAGATCAGGGTTATATTG GCGACTGCTTTGTTACCTGTGTTCATAGGGGTTACTGCCCGTTTGGTGAGGAAACCTTTGGAGACTCTGAAGCGGCTTGTCAGGAATATGGATCTTCGTA GAGTACTCTCAACCTGA
AA sequence Show only first row Show all	>Lus10041537 pacid=23146998 polypeptide=Lus10041537 locus=Lus10041537.g ID=Lus10041537.BGIv1.0 annot-version=v1.0 MDLKLIEACHSGNINILHQLLRSNPFLLDHLTTANPLHVAAIAGHVDFTKEILKLKPGLGIEVNQDGLTALHYAAANGQLEIVRELVKVNKDSCRLQGRD GKTPLHSAAVKGRADVIKEMLVSCPDCMRDVTVQRETALHLAIRNCQFGAIKVLVDHLMTSEMNKTRVLNAKDEQGNTVLHLASWKKHRPVIELLLGNEM VSSSGTVLEMEVNAKNNAGLTALDLMLIFPSEAGDREIIEILVAAGAVRNQEPPHFQQQQQEQELPSSMSAKDMEEYFKFKKGRDSPSEARSALLVIAVL VATATFQLGINPPGGVWQDTYEKSHNAGESIMGTSYGVAFSIVAVFNTIGFSTALLMINVLTTRFPLQLELQICMVAMYVTYNTSIINLSPDGVQIRVIL ATALLPVFIGVTARLVRKPLETLKRLVRNMDLRRVLST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51160			Ankyrin repeat family protein ...		Lus10041537 [exp]	0	1
AT5G39150			RmlC-like cupins superfamily p...		Lus10003116 [exp]	1.4	0.9636
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10004163 [exp]	2.0	0.9457
AT5G05340			Peroxidase superfamily protein...		Lus10034207 [exp]	2.0	0.9527
AT5G10530			Concanavalin A-like lectin pro...		Lus10004279 [exp]	3.5	0.9435
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10014108 [exp]	4.2	0.9411
AT5G05340			Peroxidase superfamily protein...		Lus10025255 [exp]	5.0	0.9435
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10013830 [exp]	6.9	0.9458
AT5G10530			Concanavalin A-like lectin pro...		Lus10004277 [exp]	7.7	0.9402
AT5G17680			disease resistance protein (TI...		Lus10003749 [exp]	7.9	0.9158
AT4G04450	WRKY	ATWRKY42, WRKY4...	WRKY family transcription fact...		Lus10038028 [exp]	8.3	0.9230

Compare expression of checked genes

Lus10041537 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.