Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02000 127 / 2e-38 ROXY1 Thioredoxin superfamily protein (.1) AT5G14070 118 / 5e-35 ROXY2 Thioredoxin superfamily protein (.1) AT1G28480 107 / 7e-31 roxy19, GRX480 Thioredoxin superfamily protein (.1) AT4G15690 105 / 2e-30 Thioredoxin superfamily protein (.1) AT4G15670 105 / 3e-30 Thioredoxin superfamily protein (.1) AT4G15700 105 / 3e-30 Thioredoxin superfamily protein (.1) AT4G15660 105 / 3e-30 Thioredoxin superfamily protein (.1) AT4G15680 103 / 1e-29 Thioredoxin superfamily protein (.1) AT5G18600 97 / 5e-27 Thioredoxin superfamily protein (.1) AT3G21460 94 / 6e-26 Glutaredoxin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035183 [exp] 154 / 6e-49 AT5G14070 148 / 6e-47 Thioredoxin superfamily protein (.1) Lus10011333 [exp] 136 / 8e-42 AT5G14070 151 / 1e-47 Thioredoxin superfamily protein (.1) Lus10023295 [exp] 115 / 1e-33 AT5G14070 123 / 5e-37 Thioredoxin superfamily protein (.1) Lus10013962 [exp] 113 / 3e-33 AT1G28480 135 / 3e-42 Thioredoxin superfamily protein (.1) Lus10038514 [exp] 111 / 3e-32 AT5G14070 122 / 2e-36 Thioredoxin superfamily protein (.1) Lus10039867 [exp] 108 / 5e-31 AT1G28480 127 / 7e-39 Thioredoxin superfamily protein (.1) Lus10018631 [exp] 107 / 9e-31 AT1G28480 127 / 8e-39 Thioredoxin superfamily protein (.1) Lus10033965 [exp] 103 / 9e-30 AT5G18600 148 / 5e-48 Thioredoxin superfamily protein (.1) Lus10002887 [exp] 102 / 6e-29 AT4G15690 149 / 3e-48 Thioredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G325800 [exp] 157 / 8e-51 AT3G02000 155 / 6e-50 Thioredoxin superfamily protein (.1) Potri.001G060600 [exp] 143 / 6e-45 AT5G14070 147 / 1e-46 Thioredoxin superfamily protein (.1) Potri.003G167000 [exp] 140 / 6e-44 AT5G14070 150 / 9e-48 Thioredoxin superfamily protein (.1) Potri.017G017300 [exp] 109 / 3e-31 AT1G28480 132 / 3e-40 Thioredoxin superfamily protein (.1) Potri.004G049800 [exp] 108 / 6e-31 AT1G28480 94 / 2e-25 Thioredoxin superfamily protein (.1) Potri.008G214500 [exp] 104 / 5e-30 AT3G21460 177 / 2e-59 Glutaredoxin family protein (.1) Potri.007G134800 [exp] 105 / 1e-29 AT1G28480 141 / 9e-44 Thioredoxin superfamily protein (.1) Potri.010G021800 [exp] 102 / 5e-29 AT5G18600 163 / 5e-54 Thioredoxin superfamily protein (.1) Potri.011G058800 [exp] 100 / 8e-28 AT1G28480 102 / 2e-28 Thioredoxin superfamily protein (.1) Potri.008G214600 [exp] 97 / 4e-27 AT5G18600 159 / 2e-52 Thioredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00462 [flax] [poplar] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Lus10041538 pacid=23146789 polypeptide=Lus10041538 locus=Lus10041538.g ID=Lus10041538.BGIv1.0 annot-version=v1.0 ATGTACCAAACAGAATCCTGGTACTTGGTAGCAGCAGCAGCAGGAGGAACGAGATCAAGAACAAGCGAAGGACTTGAATTAGGCGTGGAAAGAATACAGA GGCTGGCTGAGAGGAACGCGGTAGTGATATTCAGCATGAGCAGCTGCTGCATGTGCCACGTCATCAAGCGCCTCTTCTGCAGCATGGGTGTTAACCCCAC CGTCTACGAGCTTGACCACCAAGATGACCCCTTTACTGCCAACGACATGGAAATGGCTCTCCTCACCCTCCTCGGCGGTACTTCCTCCTCCTCCTCCTCT GCCGTCCCTGTCGTCTTCATCGGCGGCAAGCTGATCGGGGGAATGGACAGAGTCATGGCTTCTCACATTAATGGAACCCTCGTCCCTCTACTCAAACAAG CCGGCGCTCTCTGGCTCTAG
AA sequence Show only first row Show all	>Lus10041538 pacid=23146789 polypeptide=Lus10041538 locus=Lus10041538.g ID=Lus10041538.BGIv1.0 annot-version=v1.0 MYQTESWYLVAAAAGGTRSRTSEGLELGVERIQRLAERNAVVIFSMSSCCMCHVIKRLFCSMGVNPTVYELDHQDDPFTANDMEMALLTLLGGTSSSSSS AVPVVFIGGKLIGGMDRVMASHINGTLVPLLKQAGALWL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10041538 [exp]	0	1
AT1G22130	MADS	AGL104	AGAMOUS-like 104 (.1)		Lus10016809 [exp]	1.4	0.9753
AT1G44760			Adenine nucleotide alpha hydro...		Lus10018190 [exp]	2.6	0.9603
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10032240 [exp]	5.8	0.9713
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10024603 [exp]	7.5	0.9694
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10026076 [exp]	7.7	0.9610
AT3G02645			Plant protein of unknown funct...		Lus10031159 [exp]	11.0	0.9606
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10038135 [exp]	11.3	0.9610
AT3G06520			agenet domain-containing prote...		Lus10017088 [exp]	15.4	0.9504
AT1G68480	C2H2ZnF	JAG	JAGGED, C2H2 and C2HC zinc fin...		Lus10041443 [exp]	15.5	0.9582
AT5G53950	NAC	ATCUC2, CUC2, A...	CUP-SHAPED COTYLEDON 2, Arabid...		Lus10041924 [exp]	17.7	0.9536

Compare expression of checked genes

Lus10041538 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.