Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26980 168 / 5e-55 MUB4 membrane-anchored ubiquitin-fold protein 4 precursor (.1) AT4G24990 153 / 5e-49 ATGP4 Ubiquitin family protein (.1) AT1G22050 125 / 4e-38 MUB6 membrane-anchored ubiquitin-fold protein 6 precursor (.1) AT1G77870 124 / 2e-37 MUB5 membrane-anchored ubiquitin-fold protein 5 precursor (.1) AT5G15460 114 / 9e-34 MUB2 membrane-anchored ubiquitin-fold protein 2 (.1.2) AT3G01050 104 / 1e-29 MUB1 membrane-anchored ubiquitin-fold protein 1 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035184 [exp] 193 / 9e-65 AT3G26980 178 / 3e-59 membrane-anchored ubiquitin-fold protein 4 precursor (.1) Lus10032014 [exp] 192 / 2e-64 AT3G26980 174 / 9e-58 membrane-anchored ubiquitin-fold protein 4 precursor (.1) Lus10012555 [exp] 211 / 3e-64 AT5G13990 608 / 0.0 exocyst subunit exo70 family protein C2 (.1) Lus10030704 [exp] 117 / 4e-35 AT5G15460 150 / 2e-48 membrane-anchored ubiquitin-fold protein 2 (.1.2) Lus10013190 [exp] 118 / 6e-35 AT5G15460 150 / 8e-48 membrane-anchored ubiquitin-fold protein 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G325900 [exp] 178 / 4e-59 AT3G26980 169 / 7e-56 membrane-anchored ubiquitin-fold protein 4 precursor (.1) Potri.017G068100 [exp] 166 / 3e-54 AT3G26980 154 / 1e-49 membrane-anchored ubiquitin-fold protein 4 precursor (.1) Potri.012G103100 [exp] 154 / 2e-49 AT4G24990 207 / 5e-71 Ubiquitin family protein (.1) Potri.015G101200 [exp] 145 / 5e-46 AT4G24990 197 / 6e-67 Ubiquitin family protein (.1) Potri.017G090700 [exp] 120 / 4e-36 AT3G01050 157 / 7e-51 membrane-anchored ubiquitin-fold protein 1 precursor (.1) Potri.004G124600 [exp] 115 / 2e-34 AT3G01050 155 / 2e-50 membrane-anchored ubiquitin-fold protein 1 precursor (.1) Potri.002G091800 [exp] 106 / 2e-30 AT1G22050 124 / 5e-38 membrane-anchored ubiquitin-fold protein 6 precursor (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041539 pacid=23146898 polypeptide=Lus10041539 locus=Lus10041539.g ID=Lus10041539.BGIv1.0 annot-version=v1.0 ATGCCGGAGGAGGATTTTGTTGAGCTCAAGTTCAGATTATACGATGGGACCGATATTGGACCGTTTAGGTATTCTCCGGCATCCACGGTTTCCGTTTTGA AGGAAAGGATCGTCGCTGAGTGGCCAAAAGATAAGAAAACTGCACCCAAGGGAGCAAATGACATCAAACTGATAAATGCTGGGAAAATTTTGGAGAACAC CAAGACTGTTGGCCAGTGTAGAGCCCCTTTTGGAGAGCTTCCGAACAGTGTTATCACAATGCATGTCGTTGTACAGCCGTCGTTGGTGAAAGCAAAAACA GGTAACAAGATCAAATGGATACTTGCTAGAAATGGCTGCAGTTTCATCTCCTGTGTACAGTATATCGGCGACCCATTTGGGAAGGCTCTATGCTACATGG GAATGTCTTTTTGA
AA sequence Show only first row Show all	>Lus10041539 pacid=23146898 polypeptide=Lus10041539 locus=Lus10041539.g ID=Lus10041539.BGIv1.0 annot-version=v1.0 MPEEDFVELKFRLYDGTDIGPFRYSPASTVSVLKERIVAEWPKDKKTAPKGANDIKLINAGKILENTKTVGQCRAPFGELPNSVITMHVVVQPSLVKAKT GNKIKWILARNGCSFISCVQYIGDPFGKALCYMGMSF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26980		MUB4	membrane-anchored ubiquitin-fo...		Lus10041539 [exp]	0	1
					Lus10040104 [exp]	2.0	0.8503
AT1G66240		ATX1, ATATX1	homolog of anti-oxidant 1 (.1....		Lus10028859 [exp]	2.2	0.8935
AT1G50670			OTU-like cysteine protease fam...		Lus10040075 [exp]	2.8	0.8642
AT1G04960			Protein of unknown function (D...		Lus10033807 [exp]	3.5	0.8532
AT5G25540		CID6	CTC-interacting domain 6 (.1)		Lus10041253 [exp]	4.2	0.8320
AT4G39235			unknown protein		Lus10004160 [exp]	5.5	0.8380
AT3G26980		MUB4	membrane-anchored ubiquitin-fo...		Lus10032014 [exp]	9.7	0.7947
AT2G31130			unknown protein		Lus10013926 [exp]	9.8	0.8257
AT5G46030			unknown protein		Lus10025438 [exp]	12.8	0.8235
AT3G11620		BAS1	alpha/beta-Hydrolases superfam...		Lus10021300 [exp]	15.0	0.8124

Compare expression of checked genes

Lus10041539 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.