Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14080 671 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G64320 163 / 3e-42 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G55840 141 / 9e-35 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 136 / 1e-33 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G61990 137 / 2e-33 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 135 / 4e-33 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 133 / 1e-32 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 132 / 5e-32 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G19440 131 / 1e-31 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G74580 131 / 1e-31 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012551 [exp] 514 / 7e-180 AT5G14080 277 / 6e-88 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039056 [exp] 155 / 2e-39 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021989 [exp] 140 / 4e-34 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042529 [exp] 132 / 1e-31 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 129 / 5e-31 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 129 / 5e-31 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005303 [exp] 126 / 6e-30 AT1G30290 1037 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029737 [exp] 125 / 1e-29 AT1G63130 424 / 6e-140 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007468 [exp] 124 / 2e-29 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G326800 [exp] 811 / 0 AT5G14080 684 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G015900 [exp] 162 / 5e-42 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G123600 [exp] 147 / 1e-36 AT1G06710 1248 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 143 / 9e-36 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G034400 [exp] 139 / 1e-34 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G032600 [exp] 139 / 2e-34 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G045000 [exp] 139 / 2e-34 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.002G109500 [exp] 139 / 2e-34 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.004G074500 [exp] 138 / 3e-34 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G034200 [exp] 138 / 3e-34 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10041542 pacid=23146710 polypeptide=Lus10041542 locus=Lus10041542.g ID=Lus10041542.BGIv1.0 annot-version=v1.0 ATGCGACCGGCAACTGAGTTAGCAACTCGAATAAGTCGAGCTCTGATCTCAGCCTCAACTGCCCTAAAACCAGATCGGTCATGGAATCCCTCGCTGGAGC ACACTCTGCACAAGCTTGGCTGTCGGGAGGCACTGACTCCATCCCTAGTGGCTGGCGTAATCGACCCGCATCTGTTGAGTCACCACTCGCTTGCTCTCGG GTTTTTCAACTGGGCCACTCAGCAACCCGGATTCGCTCACAACTCCATCTCGTATCAATCCATCTTCAAGTCTCTCTCGTCTTCTCGGCAATTTACTGCC GTCGACTCTTTGTTGAAGCAAGTTAAAGCCCAGAGCTTGCCTCTCGATCCGCCGACGTATAGCTTCGTCATTAAGACTTTGTTACAAGGGAAGAAGACCC TTAACGCGTTTCGTGTATTTAACAACGCTAAATCCGGGCTATCTTGTCTTGATCCTAAGGTATGCAACTCGCTTTTGGCTGCTTTGAGTTCTGAAGGGTG TCTCGAGAATGCATTCAAGGTGTTCGAAGAAATGACTAGAAGAGAAGTTGCCTTCAGTACTATTGGGTTTGGAGTGTTTATATGGAAGCTTTGTGCAAAA AACAATTTGGATGTAGTGCTAACCGTGTTGGATAGGGTGAATAATGATGGAAAGTCTTCCATCAATGGATCAGTTATCGCTCTTCTTGTTGTTCACGGGC TTTGTAAGGTTTCCAGGAATGATGAAGCTTTGTGGGCATTGAATGAGTTGAGAATGAAGAAGTGCAAGCCTGATTTTATGGCATATAGAATAGTTGCGGA GGCATTTAGATCAACGGGGAGTGTGGTTGATGTGAACATAATTCTGAAGATGAAGAGAAAGTTGGGTGTAGCACCGAGAAGTAATGACTATAGAGACTTC GTTTTTGGTTTAATAGCAGAGACACTGACACTTGAAGCGAAAGAAATAGGTGAGGTTATTGCGAATGGAAATTTCTCTGTTGAGGATGATGTCTTGAATC AACTAATTGTATCAGTTTCGAGCATTGATCCTGATTCTGCACTTATGTTCTTCGATTTCATGCTGAGAAAGGGGACGTTACCTGCTCTTTTAACATTGAG TATCCTGAGCAAGAACCTCTGTAAGCATAATAAGATTGACGAATTGTTGGATCTATATGATTGCTTGTCTCGACATGACTATTTCTCTGACATGGAGAGT TGCAATGTTATGTTTTCATTTCTGTGCAAGGCCGGTAAAGTGAGAGAGGCTTATGGGGTTCTCCACGAGATGAAGAAGAAAGGGTTGGGACCTGATATCT CAATGTATAACTTCCTGATGGAAACATGCTGTAGACATGATCTCATACGTCCTGCTAAAAAGCTTTGGGATGAAATGTTTGTGACTGGATGTGGAGTGAA TTTGAGAACTTACAATATCCTTATAGGAAAATTATCAGCAATTGATGAAGTTGAAGAGGCTTTGAGGCTCTTCAATCAGATGTCGGAGAAAGGAGTGGCA CCCGATGCTGTAACCTACGAATCGCTACTTGAAGGGCTTTGCCGAGAGACCAAATTTGAGGATGCTGTGGAAATCTTTAACAAGTGTGTGAATCAGGATG CAATGCTTGCACGGAATGTATTGAGCACCTCCATTCTCAAGCAGTGTGAAAAAGGTCAATTCCTTTTGAGTTCTAAGGTGCTCCATGGCCTCACTAATGA TATAGGACATTCAGGATCTCATGTGCTCTTAATGAAATGTCTAGCTGACGCTAAAGAGTTCAGATTGGCAGTTGAACATGTAAAACGGATTCGAGACACC TCATCTTCGATGTTTCATACAATTGTTTCTGAGGTTTCGGCCTCGTTATCTACTTCCATTGAGCCAGATCTTCTTCGGCAGTTAGTCCAGGCCATGGCAG AACAAGGAGTAGATTTCAGGGATACAAGGAATGCTATTTCTCCGTAA
AA sequence Show only first row Show all	>Lus10041542 pacid=23146710 polypeptide=Lus10041542 locus=Lus10041542.g ID=Lus10041542.BGIv1.0 annot-version=v1.0 MRPATELATRISRALISASTALKPDRSWNPSLEHTLHKLGCREALTPSLVAGVIDPHLLSHHSLALGFFNWATQQPGFAHNSISYQSIFKSLSSSRQFTA VDSLLKQVKAQSLPLDPPTYSFVIKTLLQGKKTLNAFRVFNNAKSGLSCLDPKVCNSLLAALSSEGCLENAFKVFEEMTRREVAFSTIGFGVFIWKLCAK NNLDVVLTVLDRVNNDGKSSINGSVIALLVVHGLCKVSRNDEALWALNELRMKKCKPDFMAYRIVAEAFRSTGSVVDVNIILKMKRKLGVAPRSNDYRDF VFGLIAETLTLEAKEIGEVIANGNFSVEDDVLNQLIVSVSSIDPDSALMFFDFMLRKGTLPALLTLSILSKNLCKHNKIDELLDLYDCLSRHDYFSDMES CNVMFSFLCKAGKVREAYGVLHEMKKKGLGPDISMYNFLMETCCRHDLIRPAKKLWDEMFVTGCGVNLRTYNILIGKLSAIDEVEEALRLFNQMSEKGVA PDAVTYESLLEGLCRETKFEDAVEIFNKCVNQDAMLARNVLSTSILKQCEKGQFLLSSKVLHGLTNDIGHSGSHVLLMKCLADAKEFRLAVEHVKRIRDT SSSMFHTIVSEVSASLSTSIEPDLLRQLVQAMAEQGVDFRDTRNAISP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14080			Tetratricopeptide repeat (TPR)...		Lus10041542 [exp]	0	1
AT2G01220			Nucleotidylyl transferase supe...		Lus10032989 [exp]	7.9	0.9233
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Lus10038952 [exp]	11.0	0.9300
AT3G10260			Reticulon family protein (.1.2...		Lus10029822 [exp]	12.0	0.9155
AT1G22800			S-adenosyl-L-methionine-depend...		Lus10018987 [exp]	12.4	0.9085
AT5G46110		TPT, APE2	triose-phosphate ⁄ phosp...		Lus10037085 [exp]	22.3	0.9190
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Lus10030571 [exp]	22.3	0.9128
AT1G73670		ATMPK15	MAP kinase 15 (.1)		Lus10021784 [exp]	23.0	0.9062
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10017553 [exp]	24.0	0.9074
AT1G54650			Methyltransferase family prote...		Lus10005515 [exp]	25.1	0.8909
AT1G49350			pfkB-like carbohydrate kinase ...		Lus10010290 [exp]	25.1	0.9080

Compare expression of checked genes

Lus10041542 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.