Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01990 606 / 0 ACR6 ACT domain repeat 6 (.1) AT1G69040 528 / 0 ACR4 ACT domain repeat 4 (.1.2) AT2G03730 483 / 2e-169 ACR5 ACT domain repeat 5 (.1.2) AT1G76990 404 / 3e-138 ACR3 ACT domain repeat 3 (.1.2.3.4.5) AT1G12420 395 / 6e-135 ACR8 ACT domain repeat 8 (.1) AT4G22780 391 / 3e-133 ACR7 ACT domain repeat 7 (.1) AT5G25320 369 / 4e-124 ACT-like superfamily protein (.1) AT5G65890 331 / 2e-109 ACR1 ACT domain repeat 1 (.1.2) AT1G16880 62 / 2e-10 ACR11 ACT domain repeats 11, uridylyltransferase-related (.1.2) AT2G39570 54 / 1e-07 ACR9 ACT domain repeats 9, ACT domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012550 [exp] 892 / 0 AT3G01990 612 / 0.0 ACT domain repeat 6 (.1) Lus10036827 [exp] 541 / 0 AT1G69040 702 / 0.0 ACT domain repeat 4 (.1.2) Lus10003136 [exp] 461 / 1e-160 AT1G69040 520 / 0.0 ACT domain repeat 4 (.1.2) Lus10011329 [exp] 452 / 4e-157 AT1G69040 515 / 0.0 ACT domain repeat 4 (.1.2) Lus10028646 [exp] 403 / 7e-138 AT1G76990 699 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Lus10018943 [exp] 403 / 6e-135 AT1G76990 686 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Lus10011715 [exp] 375 / 3e-126 AT5G65890 520 / 0.0 ACT domain repeat 1 (.1.2) Lus10019191 [exp] 311 / 4e-104 AT1G69040 434 / 2e-152 ACT domain repeat 4 (.1.2) Lus10006662 [exp] 248 / 5e-78 AT4G22780 483 / 4e-170 ACT domain repeat 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G327000 [exp] 745 / 0 AT3G01990 630 / 0.0 ACT domain repeat 6 (.1) Potri.008G109200 [exp] 556 / 0 AT1G69040 723 / 0.0 ACT domain repeat 4 (.1.2) Potri.T124144 [exp] 556 / 0 AT1G69040 721 / 0.0 ACT domain repeat 4 (.1.2) Potri.010G138600 [exp] 554 / 0 AT1G69040 743 / 0.0 ACT domain repeat 4 (.1.2) Potri.012G083000 [exp] 520 / 0 AT1G69040 493 / 3e-173 ACT domain repeat 4 (.1.2) Potri.015G100300 [exp] 512 / 0 AT1G69040 483 / 3e-169 ACT domain repeat 4 (.1.2) Potri.012G102200 [exp] 506 / 4e-178 AT1G69040 473 / 5e-165 ACT domain repeat 4 (.1.2) Potri.001G115600 [exp] 447 / 1e-155 AT1G12420 627 / 0.0 ACT domain repeat 8 (.1) Potri.001G060100 [exp] 441 / 1e-152 AT1G69040 505 / 7e-178 ACT domain repeat 4 (.1.2) Potri.003G116600 [exp] 437 / 2e-151 AT1G12420 624 / 0.0 ACT domain repeat 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0070 [flax] [poplar] ACT PF01842 [flax] [poplar] ACT ACT domain
Representative CDS sequence Show only first row Show all	>Lus10041543 pacid=23146865 polypeptide=Lus10041543 locus=Lus10041543.g ID=Lus10041543.BGIv1.0 annot-version=v1.0 ATGGATGATGAATACGCTAAGCTTATCAGGAGGATGAACCCTCCCAGAGTTGTGATCGACAACGATGCTAGCGAAGATGCAACTGTTATCCAGGTTGACA GTGTGAACAAGCATGGGATACTTCTGGAAGTTGTACAAGTGCTTACAGACATGAACCTTGTGATTAAAAAAGCATATATTTCGTCTGATGGTGGATGGTT TATGGATGTGTTCAAAGTCACTGATCAAGATGGGAACAAAATCACGGATGAGGAAGATATCGATTATATCCAGCGGAGACTTGAAAACGATGCAAGTATT CTCCCCATGTTAACTGGCTCTGTCGGGGTGATGCCATCTGAAGAACATACCGCAATTGAACTCACCGGTACAGACCGGCCAGGTTTGCTGTCTGAAGTAT GTGCAGTTCTAGCAGACCTGCACTGTAATGTCATAAACGCGGAGATATGGACTCATAATGCCAGGGCAGCTGCAGTAGTGCATGTCACCGATTATTCCAC AGGGACGTCTGTCAAAGATCTGAAGCGGCTAGCTACGATCAAAGAACTCCTCTGCAATGTTCTTAAAGGAAACAATGATTTAAACACAGCAAAAACAAGT CTTTCTCCGCCTGGAGCAATGAGCAAAGAAAGAAGATTACATCAGATTATGCTGGCAGATAGGGATTATGAAAGGGTTGGGAGAGTAGGACTTGGGAGTA TGGAAGATAAATCGAGGCCTCATGTTACTGTTTTGAACATCGAGAAAGATTACTCAGTAATCACGATGAGATCAAGGGATCGCCCTAAGCTTCTTTTTGA CATTGTCTGCACTCTAACTGATATGGAATATGTTGTCTTCCATGGAATGGTCAACACATCTGGGAGGAAGGAAGCTTATCAGGAATTCTATATCCGCCAT GTCGATGGATTGCCTATAAGTTCAGAAGCTGAGCGTGAGCGTGTGATACAATGCCTTGAAGCAGCCATCGAAAGGAGAGCATACGAGGGGCTTGAGCTAG AGCTTTGCACCGAAGACCGAGCTGGTCTTCTCTCAGACATCACAAGGATATTCAGAGAGAACAGCTTGTGCATCAAGAGAGCAGAGATCTCAACCAAAGG AGGTAAAGCTGAAGACAGATTCTATGTCACTGATGTGACTGGAAACTCGGTAGAGCCACGGATAATAGACTCGATTTGCCGGCAAATTGGACAGACAAAG CTTTTTGTCAAACGCAGCTTTTTAATCCCGCCAAGCAATCCATCTGCACAAGACACAACAATGGGGTACCTCTTCGGAAACCTGTTCAAGGCGCGAACTT CCCCGAATTTCAAAATCGTCGGATCCTACTCGTAA
AA sequence Show only first row Show all	>Lus10041543 pacid=23146865 polypeptide=Lus10041543 locus=Lus10041543.g ID=Lus10041543.BGIv1.0 annot-version=v1.0 MDDEYAKLIRRMNPPRVVIDNDASEDATVIQVDSVNKHGILLEVVQVLTDMNLVIKKAYISSDGGWFMDVFKVTDQDGNKITDEEDIDYIQRRLENDASI LPMLTGSVGVMPSEEHTAIELTGTDRPGLLSEVCAVLADLHCNVINAEIWTHNARAAAVVHVTDYSTGTSVKDLKRLATIKELLCNVLKGNNDLNTAKTS LSPPGAMSKERRLHQIMLADRDYERVGRVGLGSMEDKSRPHVTVLNIEKDYSVITMRSRDRPKLLFDIVCTLTDMEYVVFHGMVNTSGRKEAYQEFYIRH VDGLPISSEAERERVIQCLEAAIERRAYEGLELELCTEDRAGLLSDITRIFRENSLCIKRAEISTKGGKAEDRFYVTDVTGNSVEPRIIDSICRQIGQTK LFVKRSFLIPPSNPSAQDTTMGYLFGNLFKARTSPNFKIVGSYS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01990		ACR6	ACT domain repeat 6 (.1)		Lus10041543 [exp]	0	1
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10035285 [exp]	2.8	0.8829
AT5G12200		PYD2	pyrimidine 2 (.1)		Lus10026817 [exp]	3.0	0.9093
AT1G48840			Plant protein of unknown funct...		Lus10020973 [exp]	3.5	0.8981
AT5G53350		CLPX	CLP protease regulatory subuni...		Lus10036701 [exp]	4.2	0.9040
AT1G69340			appr-1-p processing enzyme fam...		Lus10036809 [exp]	4.9	0.8909
AT4G32160			Phox (PX) domain-containing pr...		Lus10002925 [exp]	6.5	0.8982
AT5G60580			RING/U-box superfamily protein...		Lus10022585 [exp]	6.7	0.8807
AT5G10650			RING/U-box superfamily protein...		Lus10026226 [exp]	7.1	0.8937
AT1G13990			unknown protein		Lus10036787 [exp]	8.1	0.8723
AT2G35510		SRO1	similar to RCD one 1 (.1)		Lus10035390 [exp]	8.5	0.8578

Compare expression of checked genes

Lus10041543 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.