Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27020 1109 / 0 YSL6 YELLOW STRIPE like 6 (.1) AT5G41000 1061 / 0 YSL4 YELLOW STRIPE like 4 (.1) AT1G65730 750 / 0 YSL7 YELLOW STRIPE like 7 (.1) AT5G24380 714 / 0 ATYSL2, YSL2 YELLOW STRIPE like 2 (.1) AT4G24120 712 / 0 ATYSL1, YSL1 YELLOW STRIPE like 1 (.1) AT5G53550 708 / 0 ATYSL3, YSL3 YELLOW STRIPE like 3 (.1.2) AT3G17650 701 / 0 YSL5, PDE321 pigment defective 321, YELLOW STRIPE like 5 (.1) AT1G48370 695 / 0 YSL8 YELLOW STRIPE like 8 (.1) AT5G45450 229 / 1e-70 Oligopeptide transporter OPT superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012549 [exp] 1301 / 0 AT3G27020 1154 / 0.0 YELLOW STRIPE like 6 (.1) Lus10035194 [exp] 1218 / 0 AT3G27020 1147 / 0.0 YELLOW STRIPE like 6 (.1) Lus10032024 [exp] 1123 / 0 AT3G27020 1055 / 0.0 YELLOW STRIPE like 6 (.1) Lus10013323 [exp] 753 / 0 AT1G65730 1127 / 0.0 YELLOW STRIPE like 7 (.1) Lus10034177 [exp] 734 / 0 AT1G65730 1115 / 0.0 YELLOW STRIPE like 7 (.1) Lus10022360 [exp] 733 / 0 AT5G53550 1044 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10043408 [exp] 728 / 0 AT1G65730 1114 / 0.0 YELLOW STRIPE like 7 (.1) Lus10017406 [exp] 697 / 0 AT1G65730 872 / 0.0 YELLOW STRIPE like 7 (.1) Lus10010205 [exp] 688 / 0 AT1G65730 873 / 0.0 YELLOW STRIPE like 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G327300 [exp] 1127 / 0 AT3G27020 1088 / 0.0 YELLOW STRIPE like 6 (.1) Potri.017G150500 [exp] 766 / 0 AT1G65730 936 / 0.0 YELLOW STRIPE like 7 (.1) Potri.017G151800 [exp] 755 / 0 AT1G65730 935 / 0.0 YELLOW STRIPE like 7 (.1) Potri.017G151600 [exp] 754 / 0 AT3G17650 921 / 0.0 pigment defective 321, YELLOW STRIPE like 5 (.1) Potri.004G069200 [exp] 749 / 0 AT1G65730 964 / 0.0 YELLOW STRIPE like 7 (.1) Potri.004G069300 [exp] 731 / 0 AT3G17650 897 / 0.0 pigment defective 321, YELLOW STRIPE like 5 (.1) Potri.011G055224 [exp] 710 / 0 AT5G53550 1008 / 0.0 YELLOW STRIPE like 3 (.1.2) Potri.005G093800 [exp] 677 / 0 AT1G65730 896 / 0.0 YELLOW STRIPE like 7 (.1) Potri.001G082400 [exp] 665 / 0 AT4G24120 813 / 0.0 YELLOW STRIPE like 1 (.1) Potri.001G084400 [exp] 645 / 0 AT4G24120 932 / 0.0 YELLOW STRIPE like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [flax] [poplar] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Lus10041544 pacid=23146662 polypeptide=Lus10041544 locus=Lus10041544.g ID=Lus10041544.BGIv1.0 annot-version=v1.0 ATGGGAACCGAGATCTCTGAATCGCTCCTCTTGGACTCCGACACGACCAAGGTCGACGTGTCATTGGCCGACGAGCAGGTGCCGGAATGGAAGGAGCAGA TTACCATTCGTGGCCTGGTTGTTAGCGCCTTGTTAGGCGGGCTCTTCTGTGTAATAACACACAAGCTCAATCTCACCGTCGGTATTATTCCGTCATTGAA TGTCGCTGCCGGTCTACTCGGATTCTTCTTCGTCAAGTCCTGGACTGGATTTCTTTCCAAGTTGGGTTTCAACGTCACTCCCTTCACCAAGCAGGAAAAC ACGGTCATCCAGACCTGTGTAGTTGCCAGCTATGGCCTCGCCTTCAGCGGTGGTTTCGGATCCTATTTGATTGCCTTGGATGAGCGAACCTATGAGTTGA TCGGTAAGGACTATCCCGGTAATCGGGCAGAAGATGTTATCAACCCTGGATTGGGGTGGATGATCGGGTTTATGTTCGTGGTCAGCTTTCTCGGGCTTTT TAGCCTTGTCCCCCTCCGAAAGGTTATGGTCATGGATTATAAGCTTACATATCCAAGTGGGACAGCTACAGCAATGTTGATCAATAGCTTCCATACAGAC ACTGGAGCTGAGTTGGCTGGTGGACCAGCTACAGCAATGTTGATCAATAGCTTCCATACAGACACTGGAGCTGAGTTGGCTGGGAAACAAGTGAAATGTC TTGGGAAGTACTTAAGTTTAAGTTTGGTTTGGAGCTGCTTTAAGTGGTTTTTCAGTGGTGTTGGAGACTCGTGCGGATTTGACAACTTCCCAAGTCTTGG TCTGACCCTTTTTAAGAATTCGTTTTACTTTGACTTCAGTCCAACTTATGTTGGATGTGGTCTTATTTGTCCACACATAGTCAACTGCTCCTGTCTCTTT GGTGCTATCATTTCCTGGGGTTTCCTATGGCCCTTCATCTCTCAACACGCTGGTGACTGGTATCCAGCTGACCTTGGTAGTAATGATTTCAAAGGACTTT ATGGATACAAGGTCTTCATATCTATTGCCCTTATCCTCGGGGATGGTCTCTATAATTTAGTCAAGATTATTTGGATAAGTACCAGGGAAATGTGCAATAA AAGCACAAAAGAGCACAAGCTTCCTGGTCATACAGAGATTCTAGATGATCATGACTCCAAATTACAACTGGAGCAAAAGAAAAGAGATGAGGTATTTCTG AAAGACAGAATACCTACCTGGTTTGGAGCATCTGGATATGTCTGTTTAGCTGCAGTATCAATCGCAACGATGCCACTCATCTTTCCACCTCTCAAATGGT ATTTGGTTCTGGCATGCTATGTGATTGCCCCAGCTTTCGCGTTCTGCAACTCCTATGGCACGGGGCTAACAGACTGGAGTTTGACGTCTACCTATGGAAA AATCGGTCTTTTTGTGATTGCTTCCATAATCGGACCTAATGGAGGGGTTGTAGGTGGTTTAGCAGCTTGTGGAGTGATGATGTCCATAGTCTCCACTGCA GCCGATCTTATGCAGGACTTCAAGACAGGATACCTCACTCTATCATCGGCAAAGTCCATGTTCGTGAGCCAATTGATCGGAACAGCAATGGGATGTGTAA TCGCGCCGTTAACTTTCTGGTTGTTTTGGACCGCGTTCGATATCGGAGCCCCAGATGGACCATACAAAGCCCCCTATGCGGTCATATTTAGGGAAATGGC GATCCTCGGTGTTGAAGGCTTGTCAGAACTTCCCAAGCATTGTCTGGCCATATGCTGCGGATTCTTCGTAGCTGCTTTGGTTATAAATCTACTGAGGGAC GTGCTTCCTAGTAAAGTCTCCCAGTTCATTCCAATTCCCATGGCCATGGCAGTTCCGTTCTACATCGGAGCTTATTTTACAGTGGACATGTTTGTTGGGA CAGTGATTCTGTTTGTGTGGGAACGGATTAATAGGAAGGATTCAGAAGATTTTGCAGGGGCGGTTGCGTCAGGGTTGATCTGTGGCGATGGGATATGGAC CATACCATCAGCAGTGCTATCTCTTTTGAGGGTGAATCCACCCATCTGCATGTACTTTGGCCCTGCTGTGAGCAGCTGA
AA sequence Show only first row Show all	>Lus10041544 pacid=23146662 polypeptide=Lus10041544 locus=Lus10041544.g ID=Lus10041544.BGIv1.0 annot-version=v1.0 MGTEISESLLLDSDTTKVDVSLADEQVPEWKEQITIRGLVVSALLGGLFCVITHKLNLTVGIIPSLNVAAGLLGFFFVKSWTGFLSKLGFNVTPFTKQEN TVIQTCVVASYGLAFSGGFGSYLIALDERTYELIGKDYPGNRAEDVINPGLGWMIGFMFVVSFLGLFSLVPLRKVMVMDYKLTYPSGTATAMLINSFHTD TGAELAGGPATAMLINSFHTDTGAELAGKQVKCLGKYLSLSLVWSCFKWFFSGVGDSCGFDNFPSLGLTLFKNSFYFDFSPTYVGCGLICPHIVNCSCLF GAIISWGFLWPFISQHAGDWYPADLGSNDFKGLYGYKVFISIALILGDGLYNLVKIIWISTREMCNKSTKEHKLPGHTEILDDHDSKLQLEQKKRDEVFL KDRIPTWFGASGYVCLAAVSIATMPLIFPPLKWYLVLACYVIAPAFAFCNSYGTGLTDWSLTSTYGKIGLFVIASIIGPNGGVVGGLAACGVMMSIVSTA ADLMQDFKTGYLTLSSAKSMFVSQLIGTAMGCVIAPLTFWLFWTAFDIGAPDGPYKAPYAVIFREMAILGVEGLSELPKHCLAICCGFFVAALVINLLRD VLPSKVSQFIPIPMAMAVPFYIGAYFTVDMFVGTVILFVWERINRKDSEDFAGAVASGLICGDGIWTIPSAVLSLLRVNPPICMYFGPAVSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27020		YSL6	YELLOW STRIPE like 6 (.1)		Lus10041544 [exp]	0	1
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10004270 [exp]	2.6	0.9301
AT5G23050		AAE17	acyl-activating enzyme 17 (.1)		Lus10038966 [exp]	3.7	0.9362
AT4G37410		CYP81F4	"cytochrome P450, family 81, s...		Lus10024083 [exp]	4.9	0.9437
AT4G27750		ISI1	IMPAIRED SUCROSE INDUCTION 1, ...		Lus10041980 [exp]	6.2	0.9230
AT5G57700			BNR/Asp-box repeat family prot...		Lus10008903 [exp]	6.6	0.9350
AT3G58040		SINAT2	seven in absentia of Arabidops...		Lus10013739 [exp]	6.8	0.9065
AT2G22690			zinc ion binding (.1.2)		Lus10014078 [exp]	6.9	0.9362
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Lus10036243 [exp]	8.5	0.9345
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10004026 [exp]	8.9	0.9348
AT2G30600			BTB/POZ domain-containing prot...		Lus10012262 [exp]	9.8	0.9295

Compare expression of checked genes

Lus10041544 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.