Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13080 169 / 8e-54 WRKY ATWRKY75, WRKY75 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) AT3G01970 155 / 2e-48 WRKY ATWRKY45, WRKY45 WRKY DNA-binding protein 45 (.1) AT5G41570 131 / 2e-38 WRKY ATWRKY24, WRKY24 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 24, WRKY DNA-binding protein 24 (.1) AT1G64000 128 / 3e-37 WRKY ATWRKY56, WRKY56 WRKY DNA-binding protein 56 (.1) AT2G46130 124 / 8e-37 WRKY ATWRKY43, WRKY43 WRKY DNA-binding protein 43 (.1.2) AT4G18170 110 / 6e-29 WRKY ATWRKY28, WRKY28 WRKY DNA-binding protein 28 (.1) AT5G49520 110 / 9e-29 WRKY ATWRKY48, WRKY48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) AT1G29860 108 / 1e-28 WRKY ATWRKY71, WRKY71 WRKY DNA-binding protein 71 (.1) AT1G69310 107 / 3e-28 WRKY ATWRKY57, WRKY57 WRKY DNA-binding protein 57 (.1.2) AT5G46350 106 / 1e-27 WRKY ATWRKY8, WRKY8 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 8, WRKY DNA-binding protein 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012547 [exp] 211 / 9e-71 AT5G13080 172 / 2e-56 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Lus10011346 [exp] 169 / 2e-53 AT5G13080 179 / 1e-58 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Lus10003128 [exp] 169 / 2e-53 AT5G13080 179 / 2e-58 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Lus10007906 [exp] 137 / 2e-40 AT1G64000 168 / 6e-54 WRKY DNA-binding protein 56 (.1) Lus10036401 [exp] 136 / 4e-40 AT1G64000 170 / 1e-54 WRKY DNA-binding protein 56 (.1) Lus10017067 [exp] 115 / 8e-31 AT5G49520 184 / 2e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10037785 [exp] 114 / 5e-30 AT5G49520 179 / 4e-53 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10030424 [exp] 108 / 1e-27 AT1G13960 421 / 7e-144 WRKY DNA-binding protein 4 (.1.2) Lus10004537 [exp] 106 / 1e-27 AT1G29860 188 / 1e-58 WRKY DNA-binding protein 71 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G328000 [exp] 186 / 5e-60 AT5G13080 174 / 2e-56 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.017G066860 [exp] 184 / 3e-59 AT5G13080 178 / 1e-57 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.001G058800 [exp] 173 / 3e-55 AT5G13080 171 / 2e-55 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.003G169100 [exp] 173 / 3e-55 AT5G13080 168 / 2e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.015G099200 [exp] 161 / 2e-50 AT5G13080 154 / 2e-48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.014G090700 [exp] 137 / 8e-41 AT2G46130 169 / 2e-54 WRKY DNA-binding protein 43 (.1.2) Potri.002G164900 [exp] 137 / 1e-40 AT2G46130 172 / 6e-56 WRKY DNA-binding protein 43 (.1.2) Potri.002G193000 [exp] 115 / 6e-31 AT2G47260 185 / 3e-56 WRKY DNA-binding protein 23 (.1) Potri.014G118200 [exp] 114 / 1e-30 AT2G47260 190 / 5e-58 WRKY DNA-binding protein 23 (.1) Potri.008G103300 [exp] 114 / 4e-30 AT5G49520 170 / 3e-49 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10041546 pacid=23146842 polypeptide=Lus10041546 locus=Lus10041546.g ID=Lus10041546.BGIv1.0 annot-version=v1.0 ATGGAGAAGTTCCAGATGTTGTTCCCCTTTTCATCAACTGCCACAACTTCTTCTTCTTCTTCCTCTACTTGCTACTCTGATCACTGTCATCATTTATTAA CATCTTCGCCGACGACTATTAACAACAACACTAGCTTTAATGGTCAAGTGATGATGAGGAGCCCTTCTGATCATCATCATCATCGGGATGATAAGATGTT CCACGATTATGTTGATCAGACGGGTGGGAGTTGCGACCATCGTGAGGAGCAGGCGCTTACTATGGAAGCGGTTGCAGCAGATCATATTGTAGATCATGAT GGAGGATCATCAGGGAAGGTGAAGAAGGTGAAGAAGCAGCCCAAGTATGCATTCCAGACAAGGAGTCAAGTCGATATTCTTGATGATGGCTATCGTTGGA GGAAGTATGGTCAAAAGGCTGTCAAGAAGAACAAGTTCCCTAGGAGCTACTACAGGTGCACATATCAAGGGTGCAATGTGAAGAAGCAAGTTCAAAGGGT GAACAAAGACGAAGGGGTGGTTACCACCACTTACGAAGGCATCCACACCCATCCAATCGAGAAGCCCAGTGAAAATTTTGAGCATATCTTGAGCCAGATG CAAATCTACACTCCCTTTTAA
AA sequence Show only first row Show all	>Lus10041546 pacid=23146842 polypeptide=Lus10041546 locus=Lus10041546.g ID=Lus10041546.BGIv1.0 annot-version=v1.0 MEKFQMLFPFSSTATTSSSSSSTCYSDHCHHLLTSSPTTINNNTSFNGQVMMRSPSDHHHHRDDKMFHDYVDQTGGSCDHREEQALTMEAVAADHIVDHD GGSSGKVKKVKKQPKYAFQTRSQVDILDDGYRWRKYGQKAVKKNKFPRSYYRCTYQGCNVKKQVQRVNKDEGVVTTTYEGIHTHPIEKPSENFEHILSQM QIYTPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10041546 [exp]	0	1
AT2G19500		ATCKX2, CKX2	cytokinin oxidase 2 (.1)		Lus10031200 [exp]	1.4	0.9069
AT4G27450			Aluminium induced protein with...		Lus10034883 [exp]	5.7	0.9011
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10041643 [exp]	11.1	0.9047
AT5G24090		ATCHIA	chitinase A (.1)		Lus10039317 [exp]	17.9	0.8678
					Lus10038520 [exp]	19.6	0.9024
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10015252 [exp]	19.7	0.8810
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10004163 [exp]	20.6	0.8910
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10012880 [exp]	25.9	0.8329
AT3G10980		SAG20, WI12, AT...	PLAC8 family protein (.1)		Lus10012212 [exp]	29.1	0.8993
AT3G18150			RNI-like superfamily protein (...		Lus10014142 [exp]	33.0	0.8088

Compare expression of checked genes

Lus10041546 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.