Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012546 [exp] 170 / 4e-56 AT3G01960 43 / 5e-06 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G065916 [exp] 62 / 2e-13 AT3G01960 / unknown protein Potri.001G328300 [exp] 52 / 9e-10 AT3G01960 54 / 6e-10 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041547 pacid=23146741 polypeptide=Lus10041547 locus=Lus10041547.g ID=Lus10041547.BGIv1.0 annot-version=v1.0 ATGGAGTACTCAAGCGGAAGAAAAAGAAGAGGGTTCTTGAAGAGCAAATTGTTCCCACTCCACAGACCAGCATCAGCATCAGCTAAGCAGCAGCAGCAGC CTAATAATAACTACAGCTATTCTTCTCCTTCATCTATGGCCTTTGCTGCCCCTGCAGTTGTCCCGAAGCAGAGTACCTACATGGCGGCGGAGACGATCAG TTGCATGATGAAGCCAAGGAGGCAGCAGGTTGATCACAACAATAAGTTCTTTGGGGTAGTGGGTGATTGTAGAATTGATGGCAAAGCTTCTACTTACATC TCTACTGTTCAGGAGCGTTTCAAGCATCATGAACACTCTTACTAA
AA sequence Show only first row Show all	>Lus10041547 pacid=23146741 polypeptide=Lus10041547 locus=Lus10041547.g ID=Lus10041547.BGIv1.0 annot-version=v1.0 MEYSSGRKRRGFLKSKLFPLHRPASASAKQQQQPNNNYSYSSPSSMAFAAPAVVPKQSTYMAAETISCMMKPRRQQVDHNNKFFGVVGDCRIDGKASTYI STVQERFKHHEHSY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10041547 [exp]	0	1
AT3G55500		ATHEXPALPHA1.7,...	EXPANSIN 16, expansin A16 (.1)		Lus10023901 [exp]	7.3	0.7836
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015746 [exp]	12.0	0.7853
AT1G71160		KCS7	3-ketoacyl-CoA synthase 7 (.1)		Lus10031486 [exp]	19.3	0.6935
					Lus10035708 [exp]	20.1	0.7013
AT5G38435		SPH8	S-protein homologue 8 (.1)		Lus10029385 [exp]	20.2	0.7673
					Lus10006897 [exp]	20.3	0.7437
AT3G47440		TIP5;1	tonoplast intrinsic protein 5;...		Lus10031157 [exp]	21.9	0.7484
AT4G35160			O-methyltransferase family pro...		Lus10008538 [exp]	32.9	0.7558
AT3G07610		IBM1	increase in bonsai methylation...		Lus10004549 [exp]	47.6	0.7055
					Lus10012561 [exp]	50.0	0.6200

Compare expression of checked genes

Lus10041547 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.