Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61120 92 / 8e-25 MADS AGL13 AGAMOUS-like 13 (.1) AT2G03710 87 / 3e-23 MADS AGL3, SEP4 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3) AT2G45650 87 / 6e-23 MADS AGL6 AGAMOUS-like 6 (.1) AT4G11880 86 / 1e-22 MADS AGL14 AGAMOUS-like 14 (.1) AT3G30260 85 / 4e-22 MADS AGL79 AGAMOUS-like 79 (.1) AT5G10140 83 / 5e-22 MADS FLF, AGL25, FLC FLOWERING LOCUS F, FLOWERING LOCUS C, AGAMOUS-like 25, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT4G22950 84 / 8e-22 MADS AGL19 AGAMOUS-like 19 (.1) AT5G15800 84 / 2e-21 MADS AGL2, SEP1 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) AT5G60910 83 / 2e-21 MADS FUL, AGL8 FRUITFULL, AGAMOUS-like 8 (.1.2) AT5G13790 83 / 3e-21 MADS AGL15 AGAMOUS-like 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012545 [exp] 122 / 1e-38 AT3G61120 92 / 1e-24 AGAMOUS-like 13 (.1) Lus10035029 [exp] 89 / 6e-25 AT5G10140 89 / 7e-24 FLOWERING LOCUS F, FLOWERING LOCUS C, AGAMOUS-like 25, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10005325 [exp] 91 / 5e-24 AT5G13790 249 / 7e-83 AGAMOUS-like 15 (.1) Lus10031665 [exp] 88 / 6e-24 AT5G62165 179 / 8e-58 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) Lus10011349 [exp] 86 / 9e-24 AT5G15800 125 / 3e-37 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10017870 [exp] 88 / 2e-23 AT1G69120 212 / 3e-69 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10037039 [exp] 84 / 2e-23 AT5G10140 93 / 2e-25 FLOWERING LOCUS F, FLOWERING LOCUS C, AGAMOUS-like 25, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10003123 [exp] 84 / 2e-23 AT5G10140 87 / 1e-23 FLOWERING LOCUS F, FLOWERING LOCUS C, AGAMOUS-like 25, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10003125 [exp] 86 / 4e-23 AT1G24260 290 / 9e-101 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G058200 [exp] 91 / 7e-25 AT2G03710 156 / 3e-48 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.001G328600 [exp] 89 / 4e-24 AT5G60910 136 / 1e-39 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.006G048700 [exp] 90 / 6e-24 AT3G57390 219 / 2e-71 AGAMOUS-like 18 (.1.2) Potri.009G055700 [exp] 89 / 1e-23 AT5G13790 241 / 9e-80 AGAMOUS-like 15 (.1) Potri.003G170200 [exp] 88 / 1e-23 AT5G65050 134 / 8e-40 MADS AFFECTING FLOWERING 2, AGAMOUS-like 31 (.1.2.3) Potri.003G169850 [exp] 87 / 3e-23 AT2G45650 143 / 5e-42 AGAMOUS-like 6 (.1) Potri.008G098400 [exp] 86 / 1e-22 AT5G15800 275 / 2e-93 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Potri.005G155300 [exp] 85 / 4e-22 AT2G22540 234 / 8e-78 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.003G170000 [exp] 84 / 7e-22 AT5G65070 136 / 2e-40 MADS AFFECTING FLOWERING 4, AGAMOUS-like 69, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.003G169700 [exp] 84 / 7e-22 AT5G65070 137 / 1e-40 MADS AFFECTING FLOWERING 4, AGAMOUS-like 69, K-box region and MADS-box transcription factor family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10041548 pacid=23146690 polypeptide=Lus10041548 locus=Lus10041548.g ID=Lus10041548.BGIv1.0 annot-version=v1.0 ATGGGGCGGGGCAAAGTTGAGATGCGCCCGATCGAGGATAAAAGCACTCGCCAAGTGACATTCTCCAAACGCAAGCGCGGCCTGCTCAAGAAAGCTCAGG AGCTTTCTGTGCTCTGCGGCGTCGAGGTCGCTGTCGTCATCTTCTCCGGCGGCGGAAAGCTGTACGAGTTCTCCGGTGGTGAAAGGATTGCTTTCTAA
AA sequence Show only first row Show all	>Lus10041548 pacid=23146690 polypeptide=Lus10041548 locus=Lus10041548.g ID=Lus10041548.BGIv1.0 annot-version=v1.0 MGRGKVEMRPIEDKSTRQVTFSKRKRGLLKKAQELSVLCGVEVAVVIFSGGGKLYEFSGGERIAF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61120	MADS	AGL13	AGAMOUS-like 13 (.1)		Lus10041548 [exp]	0	1
AT3G56960		PIP5K4	phosphatidyl inositol monophos...		Lus10003819 [exp]	3.2	0.8451
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Lus10015666 [exp]	3.5	0.8504
					Lus10014040 [exp]	4.5	0.8256
AT1G05200		GLUR3, ATGLR3.4	glutamate receptor 3.4 (.1.2)		Lus10027171 [exp]	10.1	0.8285
AT3G46970		ATPHS2, PHS2	Arabidopsis thaliana alpha-glu...		Lus10001200 [exp]	14.7	0.8186
AT1G62870			unknown protein		Lus10004325 [exp]	15.5	0.8206
AT2G40130			Double Clp-N motif-containing ...		Lus10028282 [exp]	21.8	0.8101
AT5G14460			Pseudouridine synthase family ...		Lus10022284 [exp]	22.4	0.7793
AT1G33170			S-adenosyl-L-methionine-depend...		Lus10010152 [exp]	22.8	0.7910
AT3G07400			lipase class 3 family protein ...		Lus10009590 [exp]	23.6	0.7914

Compare expression of checked genes

Lus10041548 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.