Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48660 91 / 7e-26 Protein of unknown function (DUF 3339) (.1) AT5G63500 89 / 3e-25 Protein of unknown function (DUF 3339) (.1) AT5G08391 80 / 7e-22 Protein of unknown function (DUF 3339) (.1) AT3G27030 77 / 7e-20 unknown protein AT3G27027 67 / 1e-16 Protein of unknown function (DUF 3339) (.1) AT3G01950 65 / 8e-16 Protein of unknown function (DUF 3339) (.1) AT5G40970 63 / 3e-15 Protein of unknown function (DUF 3339) (.1) AT5G14110 62 / 9e-15 Protein of unknown function (DUF 3339) (.1) AT5G40980 62 / 1e-14 Protein of unknown function (DUF 3339) (.1) AT5G40960 50 / 4e-10 Protein of unknown function (DUF 3339) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035198 [exp] 117 / 1e-36 AT3G48660 99 / 5e-29 Protein of unknown function (DUF 3339) (.1) Lus10032028 [exp] 117 / 1e-36 AT3G48660 99 / 5e-29 Protein of unknown function (DUF 3339) (.1) Lus10011353 [exp] 96 / 6e-28 AT3G48660 122 / 1e-38 Protein of unknown function (DUF 3339) (.1) Lus10003120 [exp] 94 / 2e-27 AT3G48660 121 / 5e-38 Protein of unknown function (DUF 3339) (.1) Lus10015769 [exp] 94 / 3e-27 AT3G48660 112 / 1e-34 Protein of unknown function (DUF 3339) (.1) Lus10037036 [exp] 93 / 9e-27 AT3G48660 112 / 3e-34 Protein of unknown function (DUF 3339) (.1) Lus10035201 [exp] 87 / 3e-24 AT5G08391 104 / 2e-31 Protein of unknown function (DUF 3339) (.1) Lus10032032 [exp] 87 / 3e-24 AT5G08391 104 / 2e-31 Protein of unknown function (DUF 3339) (.1) Lus10015770 [exp] 80 / 1e-21 AT5G08391 112 / 1e-34 Protein of unknown function (DUF 3339) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G170400 [exp] 96 / 3e-28 AT3G48660 89 / 3e-25 Protein of unknown function (DUF 3339) (.1) Potri.001G329000 [exp] 87 / 2e-24 AT5G08391 113 / 5e-35 Protein of unknown function (DUF 3339) (.1) Potri.017G064301 [exp] 84 / 4e-23 AT5G08391 108 / 5e-33 Protein of unknown function (DUF 3339) (.1) Potri.003G170500 [exp] 82 / 9e-23 AT5G08391 112 / 9e-35 Protein of unknown function (DUF 3339) (.1) Potri.015G098300 [exp] 82 / 3e-22 AT3G48660 107 / 3e-32 Protein of unknown function (DUF 3339) (.1) Potri.017G065444 [exp] 80 / 1e-21 AT3G48660 67 / 2e-16 Protein of unknown function (DUF 3339) (.1) Potri.001G057900 [exp] 79 / 3e-21 AT5G08391 113 / 6e-35 Protein of unknown function (DUF 3339) (.1) Potri.001G058001 [exp] 77 / 2e-20 AT3G48660 74 / 9e-19 Protein of unknown function (DUF 3339) (.1) Potri.001G328701 [exp] 74 / 9e-19 AT3G27027 115 / 7e-35 Protein of unknown function (DUF 3339) (.1) Potri.017G064500 [exp] 72 / 2e-18 AT3G27030 111 / 2e-33 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11820 [flax] [poplar] DUF3339 Protein of unknown function (DUF3339)
Representative CDS sequence Show only first row Show all	>Lus10041549 pacid=23146874 polypeptide=Lus10041549 locus=Lus10041549.g ID=Lus10041549.BGIv1.0 annot-version=v1.0 ATGGCGGATTGGGGGCCGGTGGTGATAGCAGTGGTTCTGTTTGTATTACTGACGCCGGGGCTACTGTGCCAGATCCCAGGTGGGGGTGGTAATGTGATTG GTTTGTGCAATTTCCAGACAAGTCCCATTTCCATATTTATACATACCATCATCTACTTTGGCCTCATCACCATTTTCCTCATCGCTATTGGAGTTCATAT CTCCACTGGTTGA
AA sequence Show only first row Show all	>Lus10041549 pacid=23146874 polypeptide=Lus10041549 locus=Lus10041549.g ID=Lus10041549.BGIv1.0 annot-version=v1.0 MADWGPVVIAVVLFVLLTPGLLCQIPGGGGNVIGLCNFQTSPISIFIHTIIYFGLITIFLIAIGVHISTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48660			Protein of unknown function (D...		Lus10041549 [exp]	0	1
AT5G49555			FAD/NAD(P)-binding oxidoreduct...		Lus10024010 [exp]	3.7	0.8678
AT1G68760		ATNUDX1, ATNUDT...	NUDIX HYDROLASE 1, ARABIDOPSIS...		Lus10034784 [exp]	19.1	0.8384
AT4G16480		ATINT4	inositol transporter 4 (.1)		Lus10017561 [exp]	28.3	0.7774
AT3G29170			Eukaryotic protein of unknown ...		Lus10007465 [exp]	32.8	0.8167
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Lus10000472 [exp]	49.6	0.8066
AT3G20890			RNA-binding (RRM/RBD/RNP motif...		Lus10009943 [exp]	53.1	0.7980
AT4G21800		QQT2	quatre-quart2, P-loop containi...		Lus10019602 [exp]	77.1	0.7865
					Lus10024932 [exp]	85.0	0.7947
AT3G06920			Tetratricopeptide repeat (TPR)...		Lus10034167 [exp]	94.8	0.7802
AT5G44440			FAD-binding Berberine family p...		Lus10039682 [exp]	97.3	0.7911

Compare expression of checked genes

Lus10041549 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.