Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27027 107 / 1e-31 Protein of unknown function (DUF 3339) (.1) AT3G27030 105 / 9e-30 unknown protein AT5G40980 97 / 1e-27 Protein of unknown function (DUF 3339) (.1) AT3G48660 91 / 6e-25 Protein of unknown function (DUF 3339) (.1) AT5G63500 89 / 2e-24 Protein of unknown function (DUF 3339) (.1) AT5G08391 81 / 3e-21 Protein of unknown function (DUF 3339) (.1) AT3G01950 77 / 8e-20 Protein of unknown function (DUF 3339) (.1) AT5G14110 75 / 1e-18 Protein of unknown function (DUF 3339) (.1) AT3G01940 74 / 1e-18 Protein of unknown function (DUF 3339) (.1) AT5G40970 71 / 2e-17 Protein of unknown function (DUF 3339) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012543 [exp] 110 / 1e-32 ND 100 / 2e-29 Lus10011353 [exp] 93 / 8e-26 AT3G48660 122 / 1e-38 Protein of unknown function (DUF 3339) (.1) Lus10003120 [exp] 93 / 1e-25 AT3G48660 121 / 5e-38 Protein of unknown function (DUF 3339) (.1) Lus10037036 [exp] 92 / 2e-25 AT3G48660 112 / 3e-34 Protein of unknown function (DUF 3339) (.1) Lus10015769 [exp] 91 / 5e-25 AT3G48660 112 / 1e-34 Protein of unknown function (DUF 3339) (.1) Lus10015770 [exp] 83 / 8e-22 AT5G08391 112 / 1e-34 Protein of unknown function (DUF 3339) (.1) Lus10032029 [exp] 84 / 2e-21 AT3G27027 106 / 4e-30 Protein of unknown function (DUF 3339) (.1) Lus10037035 [exp] 82 / 2e-21 AT5G08391 111 / 2e-34 Protein of unknown function (DUF 3339) (.1) Lus10032030 [exp] 79 / 2e-20 AT3G27030 106 / 2e-31 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G328701 [exp] 160 / 2e-51 AT3G27027 115 / 7e-35 Protein of unknown function (DUF 3339) (.1) Potri.003G170400 [exp] 98 / 7e-28 AT3G48660 89 / 3e-25 Protein of unknown function (DUF 3339) (.1) Potri.015G098300 [exp] 92 / 2e-25 AT3G48660 107 / 3e-32 Protein of unknown function (DUF 3339) (.1) Potri.001G329000 [exp] 87 / 1e-23 AT5G08391 113 / 5e-35 Protein of unknown function (DUF 3339) (.1) Potri.017G064972 [exp] 84 / 2e-22 AT3G27027 108 / 3e-33 Protein of unknown function (DUF 3339) (.1) Potri.001G058001 [exp] 84 / 3e-22 AT3G48660 74 / 9e-19 Protein of unknown function (DUF 3339) (.1) Potri.017G064301 [exp] 83 / 8e-22 AT5G08391 108 / 5e-33 Protein of unknown function (DUF 3339) (.1) Potri.003G170500 [exp] 81 / 4e-21 AT5G08391 112 / 9e-35 Protein of unknown function (DUF 3339) (.1) Potri.001G057900 [exp] 80 / 6e-21 AT5G08391 113 / 6e-35 Protein of unknown function (DUF 3339) (.1) Potri.017G064500 [exp] 78 / 7e-20 AT3G27030 111 / 2e-33 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11820 [flax] [poplar] DUF3339 Protein of unknown function (DUF3339)
Representative CDS sequence Show only first row Show all	>Lus10041550 pacid=23146590 polypeptide=Lus10041550 locus=Lus10041550.g ID=Lus10041550.BGIv1.0 annot-version=v1.0 ATGATCATGGGTACGGATTGGGGACCAGTCATTGTGGCTGTGGTGCTGTTCATCCTGCTATCACCTGGACTTCTGTTCCAGATACCTGCAAGAACAAGAG TGATGGAGTTTGGGAACCTCAACACATGTGCCATTGCCATTCTTGTCCACGCTGTCGTTTTCTTTTGTATAATCACCATCTTGGTTGTTGCCATTGGCAT CCATGACTGGGCAGCCCCTCTGATAGCAGCAGCACTGTTTGCATTTCTGTCACCAGGGTTGGTGTTTCAGATCCCTGGCAAGGAAAGGCCTATCGATTTC ATGAACATGAAGACAAGTTTTGCTTCCATGTTTGTTCACTTGGTCATCTTTGGTCTCCTCCTCATCTTGTTCCTCGTCCTTCTCGATCCTCACCTCTATA TCTAG
AA sequence Show only first row Show all	>Lus10041550 pacid=23146590 polypeptide=Lus10041550 locus=Lus10041550.g ID=Lus10041550.BGIv1.0 annot-version=v1.0 MIMGTDWGPVIVAVVLFILLSPGLLFQIPARTRVMEFGNLNTCAIAILVHAVVFFCIITILVVAIGIHDWAAPLIAAALFAFLSPGLVFQIPGKERPIDF MNMKTSFASMFVHLVIFGLLLILFLVLLDPHLYI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27030			unknown protein		Lus10041550 [exp]	0	1
AT1G73390			Endosomal targeting BRO1-like ...		Lus10042289 [exp]	1.0	0.8624
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10004260 [exp]	1.4	0.8549
					Lus10012543 [exp]	3.6	0.7954
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10029746 [exp]	3.9	0.8429
					Lus10017946 [exp]	3.9	0.7853
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10018595 [exp]	4.5	0.8117
AT1G14820			Sec14p-like phosphatidylinosit...		Lus10001584 [exp]	4.9	0.8308
AT1G56430		ATNAS4	ARABIDOPSIS THALIANA NICOTIANA...		Lus10029843 [exp]	5.2	0.7594
AT1G54215			proline-rich family protein (....		Lus10015652 [exp]	5.3	0.7861
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10023432 [exp]	5.7	0.8007

Compare expression of checked genes

Lus10041550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.