Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40950 223 / 2e-74 RPL27 ribosomal protein large subunit 27 (.1) AT5G15220 94 / 2e-24 Ribosomal protein L27 family protein (.1) AT2G16930 94 / 2e-24 Ribosomal protein L27 family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012538 [exp] 331 / 5e-117 AT5G40950 243 / 2e-82 ribosomal protein large subunit 27 (.1) Lus10007170 [exp] 99 / 1e-26 AT5G15220 190 / 3e-63 Ribosomal protein L27 family protein (.1) Lus10010822 [exp] 99 / 2e-26 AT5G15220 191 / 3e-63 Ribosomal protein L27 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G329500 [exp] 219 / 7e-73 AT5G40950 253 / 2e-86 ribosomal protein large subunit 27 (.1) Potri.003G009500 [exp] 97 / 7e-26 AT5G15220 201 / 2e-67 Ribosomal protein L27 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01016 [flax] [poplar] Ribosomal_L27 Ribosomal L27 protein
Representative CDS sequence Show only first row Show all	>Lus10041553 pacid=23146593 polypeptide=Lus10041553 locus=Lus10041553.g ID=Lus10041553.BGIv1.0 annot-version=v1.0 ATGGCGACCGCGAGTTTTTGCCTAATTGGTTCTTTCAAAGGCCTCTCTCTCTCTTCCAGTTCTCCTTCTTCTTCCTACTTATTGAAGGCTGACGGCGGTT TCGCCGGCTTCGGCCCGAAATGGAGCTCCGTGTCGTTGCCACGCAGAACTGCAATTCCGTTGACGATCCAAATGGCTCACAAGAAGGGAGCTGGGAGTAC CAAGAATGGCCGTGACTCCCCTGGTCAGCGTCTCGGCGTCAAGATCTACGGTGACCAACTCGCCAAACCTGGAGCAATCATCATCCGCCAGCGTGGCACC AAGTTCCATCCGGGGAACAATGTTGGAATGGGTAAGGATCATACTCTCTTCGCTCTGATCGATGGCCTCGTCAAGTTCGAGAAGCATGGCCCCGATAGAA AGAAGGTGAGTGTATACCCAAGGGAAGTTCAGCCAGAGAACCCCAACAGCTACCGAGTAAGGAAGCGGGAGCAGTTCAGATTGCAGCGAGAGAAGAAGAA AGCTAAAAAGGAAGCCAGGGAAGGCAGAGTTAGAGTGCCTGAGCCACAATTGGTATTTGCTTCCAACGCACCAGAAGACAATGCTGCAGAATGTTGA
AA sequence Show only first row Show all	>Lus10041553 pacid=23146593 polypeptide=Lus10041553 locus=Lus10041553.g ID=Lus10041553.BGIv1.0 annot-version=v1.0 MATASFCLIGSFKGLSLSSSSPSSSYLLKADGGFAGFGPKWSSVSLPRRTAIPLTIQMAHKKGAGSTKNGRDSPGQRLGVKIYGDQLAKPGAIIIRQRGT KFHPGNNVGMGKDHTLFALIDGLVKFEKHGPDRKKVSVYPREVQPENPNSYRVRKREQFRLQREKKKAKKEAREGRVRVPEPQLVFASNAPEDNAAEC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40950		RPL27	ribosomal protein large subuni...		Lus10041553 [exp]	0	1
AT4G34620		SSR16	small subunit ribosomal protei...		Lus10027058 [exp]	2.0	0.9842
AT1G75350		EMB2184	embryo defective 2184, Ribosom...		Lus10010639 [exp]	2.8	0.9838
AT4G02725			unknown protein		Lus10014675 [exp]	2.8	0.9773
AT1G05190		EMB2394	embryo defective 2394, Ribosom...		Lus10013041 [exp]	3.9	0.9768
AT1G05190		EMB2394	embryo defective 2394, Ribosom...		Lus10029120 [exp]	4.6	0.9796
AT5G11450		PPD5	PsbP domain protein 5, Mog1/Ps...		Lus10001861 [exp]	5.5	0.9768
AT5G30510		ARRPS1, RPS1	ribosomal protein S1 (.1)		Lus10037822 [exp]	7.5	0.9733
AT5G54600			Translation protein SH3-like f...		Lus10005180 [exp]	8.4	0.9758
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Lus10005719 [exp]	8.5	0.9732
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Lus10037629 [exp]	9.2	0.9692

Compare expression of checked genes

Lus10041553 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.