Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27010 463 / 3e-142 EMB2788 EMBRYO DEFECTIVE 2788, unknown protein AT1G72270 458 / 2e-140 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012535 [exp] 1352 / 0 AT4G27010 1343 / 0.0 EMBRYO DEFECTIVE 2788, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G423600 [exp] 840 / 0 AT4G27010 1769 / 0.0 EMBRYO DEFECTIVE 2788, unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11707 [flax] [poplar] Npa1 Ribosome 60S biogenesis N-terminal
Representative CDS sequence Show only first row Show all	>Lus10041554 pacid=23146755 polypeptide=Lus10041554 locus=Lus10041554.g ID=Lus10041554.BGIv1.0 annot-version=v1.0 ATGGAGGTGGAGGTTCCAGAAATTGCATTGAAAGCAACCCCTGAGGCAAAGCTCCTTGAACTGTTACATAAACTCAATTCTATCGAGATTACGTTGTGTT CCGATGCTAAAAAGGAATTCATTAAGATACTCAAGAGTGATGCTGGTGGCGAATTCCTCCGAAAGTATGTGCATTTATCTTCCAACCTTTCTGAACTCAT GGCAGCTTGGAATCTTCAACAGGGGAAACCTGGAATGTCATACATCTTGTCTTTGATTTCTGTAATTCTCGGTCATCCGGAAGGGAAATACGAAGTATAC AATAAGGAGAGAGTTGCAATAAGTGGCGCTCTTGATAGGTTTTCTCGATCTCTCATTGAAGACAAGTTTGATGTTATTCATAAGGAACTGAATAGCAAAG AAGAAAAACACCAAAATGCTGCTCTGAAGCTATTGACTTCAATAGTCCGGCGTGGGTCAGGTCTAGCTTCTGATGTTGCTAAGAAATTTGAGTTCAAAGT GCAGTCCTTTGTTAAGCTTGGACATCAACGCTTTACTACTAGAAAGGCTTTTGTTAGGTTTGGATTGTCATTTTTGGAGATGGGAAAACCAGGGTTGCTG AGGTTGATCTTGCAGCAGAAGGAAATGGTTTCTGGTATCCTTCGTGGGCTTGTAAATGATGATGATGAGACTGTTATCCATATTTTATCCACTTTGCAGG ATAGGGTTCTTACAGAGGAGTCACATGTACCCCCACCTCTTAGGAGTGTTCTCTTTGGAAGTGGTACTTTGAAACATTTGGTGGGCATTTCAGGAAGGCA GACGGGTGGGCCTCCTGCTGAATTGGCGCATAATGTGTTGCTTATGGTTTGTACAGATCCTTGCAATGGTTTGATGCCAGATTTGAAAAGACACTTGAAG GGCAACCTAAAAAGACTCTTGGACCTTATGAAGAAACTCAATGCAACAGAAAGTAATAATCATAGAGATTTGCTTCTAGAAATCGTAAAGGGGAGTCCCT TTTTAGGAGCAGCATATATGGAGGAGATTCCTTACAAACTTGACGATTTTTCCTCACCTTTCTGGTTTAATATGATTTCTCTGGCAGCAAACCTGGTGTC ATCAGTTGGTAGCAGTCTTCATTTTAGTGATTCTCCATCAAGCAATCCACCCTCCTTGTGTAAACTAGATGTGCAGACAATCCTTCGTTGCATTTCTCCT CGATCATTTAGTCGGTCAGTAGTCAACAAAGGATTACTGCACTCTGACTTTCTCGTGAAGAATGGAACTTTAAGATTTGTTTTAGAGGTGTTGAAATTGT TGGATTCGTTCTTCAAGGATTTCACTTTCTCTGATTCTGCAAAGCAAAGTAGTGAAGAAAGGGCCCCTGGAAAACAGGAAATACAAAATGAACTTCGAAC CTTGCTACCTGATCCCCAAGTTCTGCTGACGGTACTTTCTCCTTTAAGTAGTCAGGCCAGAAATGATGAATCAGGTTTGAAAAGGAAAAATGCCGAAAGT TTACCGAAGAAAATTTTCAAAAGAAGAAAGAAACGTGAGGAATGTGATATCCCTGGGGATGATGTGATTGTTGGTGGTACAGATTTGGCTTCTGAAGTTG CTTTGTCTCGGGATGATGAGGTTGTTGATCCTCAATTGCCTGGTGAAGTAGCTAGTGAAAATGACTACATGGGGATATTGTTGGAATTATGGGATTCTGA TCCATGTCTCATTTCTGCTACATCAATAAATGATGCAGAGACATTCTTTTATGCTAAGCTGCTTCAGACACTCAAAATTTATGTTTTGGTAATGCCTGCT GGGTTGGAGACATCATTTGATTTTTTCATGAATCGTTTTAATAATCCTTCAGCTTTACCAACCACTCTGCAGAGTTCTCTTCTTGGTCTTCTTGTTGAGT ATGTTGTATTGGCCCCGAGAACAGGAATTTTAATCTCTACTCCACCATTTATGTACAAGCATCTTGAGGCATTCATTAATTTGTTAATCTTTTCACCAAT ATATGATGTAAAAGTTCACGCCTACAAGCTAGCACAAGCTGCTATGTTCAGCACTGGAGCTTTCGACAGAAATGTGAATGAAATTATTGCGTGGTTCTTA CATTTACCGGGGTTCACCATGGAACGATCTCCTTGCGTGGAAGGAATGGCAATGGTCCAGAGCCTGTCGCAAGCAGTCATCTCATTTCTGTTCGAGGCAA CTTCTACAGTGGGAAGTAGCCTGTTTATGCATTGGAATGTTCTTAGAAATTTCACCGACCAGCTGACAGAATTTAAAGGTGATGTACCAGATCTTTTTAC TTTTCAACCTCTCTCTCAGTGTGCTGGTAAACATCCTTAA
AA sequence Show only first row Show all	>Lus10041554 pacid=23146755 polypeptide=Lus10041554 locus=Lus10041554.g ID=Lus10041554.BGIv1.0 annot-version=v1.0 MEVEVPEIALKATPEAKLLELLHKLNSIEITLCSDAKKEFIKILKSDAGGEFLRKYVHLSSNLSELMAAWNLQQGKPGMSYILSLISVILGHPEGKYEVY NKERVAISGALDRFSRSLIEDKFDVIHKELNSKEEKHQNAALKLLTSIVRRGSGLASDVAKKFEFKVQSFVKLGHQRFTTRKAFVRFGLSFLEMGKPGLL RLILQQKEMVSGILRGLVNDDDETVIHILSTLQDRVLTEESHVPPPLRSVLFGSGTLKHLVGISGRQTGGPPAELAHNVLLMVCTDPCNGLMPDLKRHLK GNLKRLLDLMKKLNATESNNHRDLLLEIVKGSPFLGAAYMEEIPYKLDDFSSPFWFNMISLAANLVSSVGSSLHFSDSPSSNPPSLCKLDVQTILRCISP RSFSRSVVNKGLLHSDFLVKNGTLRFVLEVLKLLDSFFKDFTFSDSAKQSSEERAPGKQEIQNELRTLLPDPQVLLTVLSPLSSQARNDESGLKRKNAES LPKKIFKRRKKREECDIPGDDVIVGGTDLASEVALSRDDEVVDPQLPGEVASENDYMGILLELWDSDPCLISATSINDAETFFYAKLLQTLKIYVLVMPA GLETSFDFFMNRFNNPSALPTTLQSSLLGLLVEYVVLAPRTGILISTPPFMYKHLEAFINLLIFSPIYDVKVHAYKLAQAAMFSTGAFDRNVNEIIAWFL HLPGFTMERSPCVEGMAMVQSLSQAVISFLFEATSTVGSSLFMHWNVLRNFTDQLTEFKGDVPDLFTFQPLSQCAGKHP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27010		EMB2788	EMBRYO DEFECTIVE 2788, unknown...		Lus10041554 [exp]	0	1
AT3G55160			unknown protein		Lus10007253 [exp]	1.0	0.9838
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10006876 [exp]	1.4	0.9810
AT1G64790		ILA	ILITYHIA (.1.2)		Lus10003102 [exp]	2.4	0.9802
AT5G40480		EMB3012	embryo defective 3012 (.1)		Lus10022271 [exp]	3.2	0.9718
AT2G13540		ENS, CBP80, ABH...	ENSALADA, CAP-BINDING PROTEIN ...		Lus10019032 [exp]	3.5	0.9681
AT1G64790		ILA	ILITYHIA (.1.2)		Lus10004767 [exp]	3.5	0.9750
AT2G34357			ARM repeat superfamily protein...		Lus10041233 [exp]	4.0	0.9653
AT3G55160			unknown protein		Lus10015366 [exp]	4.6	0.9656
AT1G64790		ILA	ILITYHIA (.1.2)		Lus10003101 [exp]	6.0	0.9597
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Lus10022482 [exp]	6.0	0.9541

Compare expression of checked genes

Lus10041554 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.