Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27080 83 / 4e-20 TOM20-3 translocase of outer membrane 20 kDa subunit 3 (.1) AT5G40930 73 / 2e-16 TOM20-4 translocase of outer membrane 20-4 (.1) AT1G27390 72 / 4e-16 TOM20-2 translocase outer membrane 20-2 (.1) AT3G27070 70 / 3e-15 TOM20-1 translocase outer membrane 20-1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012532 [exp] 130 / 2e-35 AT3G01910 616 / 0.0 sulfite oxidase (.1.2.3) Lus10035211 [exp] 112 / 6e-31 AT3G27080 210 / 1e-68 translocase of outer membrane 20 kDa subunit 3 (.1) Lus10032045 [exp] 110 / 2e-30 AT3G27080 211 / 2e-69 translocase of outer membrane 20 kDa subunit 3 (.1) Lus10011363 [exp] 69 / 2e-14 AT3G27080 180 / 1e-57 translocase of outer membrane 20 kDa subunit 3 (.1) Lus10006419 [exp] 68 / 2e-14 AT3G27080 180 / 1e-57 translocase of outer membrane 20 kDa subunit 3 (.1) Lus10008026 [exp] 47 / 1e-06 AT5G36930 204 / 1e-54 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G330200 [exp] 96 / 7e-25 AT1G27390 215 / 3e-71 translocase outer membrane 20-2 (.1) Potri.001G054900 [exp] 84 / 3e-20 AT1G27390 230 / 4e-77 translocase outer membrane 20-2 (.1) Potri.003G173400 [exp] 78 / 3e-18 AT3G27080 208 / 2e-68 translocase of outer membrane 20 kDa subunit 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF06552 [flax] [poplar] TOM20_plant Plant specific mitochondrial import receptor subunit TOM20
Representative CDS sequence Show only first row Show all	>Lus10041558 pacid=23146753 polypeptide=Lus10041558 locus=Lus10041558.g ID=Lus10041558.BGIv1.0 annot-version=v1.0 ATGAGTTTCGCCGCCCGCTTTGTCAAAATTGGAATGTTCGAATCACTCATACTTATAAAGAAGGCAATCGAATTGTTGATCTTCTCACGCCCGCAAAACC GCCGAGGCTGCCTATGCGAAGAACCCTCTCGACGCCGAGGGCAGACGATAAATCCCAAAAAGCATGACACGATTTGGTGCTTGGGCAATGCTCATCATAC ATCTTATGCGTTCTTAACCCCTGATGAGAAGGAAGCAGATACGTATTTCAAGAAAGCAACTGTCTACTTTCAGCAAGCTGTTAATGAGGATCCAAACAAT GAGCTATACGTCAAGTCTCTAGAAGTGACTGCTAAGTCAGTTCACCCTCCACAAGTGGCTATGGACATGGATGATGATGACCAGTGGATGGAAGCCATGT GCAAGACCACGATGACAGTCATATCCCACACGTTTTACACCAGTATCTCATTCAGCTCAAACGATTTCCGGACTGCTCGCGTCTCCAAAAACTGA
AA sequence Show only first row Show all	>Lus10041558 pacid=23146753 polypeptide=Lus10041558 locus=Lus10041558.g ID=Lus10041558.BGIv1.0 annot-version=v1.0 MSFAARFVKIGMFESLILIKKAIELLIFSRPQNRRGCLCEEPSRRRGQTINPKKHDTIWCLGNAHHTSYAFLTPDEKEADTYFKKATVYFQQAVNEDPNN ELYVKSLEVTAKSVHPPQVAMDMDDDDQWMEAMCKTTMTVISHTFYTSISFSSNDFRTARVSKN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27080		TOM20-3	translocase of outer membrane ...		Lus10041558 [exp]	0	1
					Lus10000363 [exp]	4.2	1.0000
AT2G25737			Sulfite exporter TauE/SafE fam...		Lus10022134 [exp]	5.5	1.0000
AT3G10340		PAL4	phenylalanine ammonia-lyase 4 ...		Lus10001405 [exp]	5.5	1.0000
					Lus10003285 [exp]	7.3	1.0000
AT4G30880			Bifunctional inhibitor/lipid-t...		Lus10019770 [exp]	7.5	1.0000
					Lus10004996 [exp]	8.5	1.0000
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10015284 [exp]	8.9	0.9536
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10027745 [exp]	9.2	1.0000
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10015988 [exp]	9.6	0.9444
AT1G61330			FBD, F-box and Leucine Rich Re...		Lus10006726 [exp]	10.2	1.0000

Compare expression of checked genes

Lus10041558 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.