Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69550 90 / 2e-20 disease resistance protein (TIR-NBS-LRR class) (.1) AT3G25510 86 / 3e-19 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT3G44480 86 / 4e-19 COG1, RPP10, RPP1 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G44670 84 / 2e-18 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT3G44630 75 / 2e-15 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT4G19050 75 / 3e-15 NB-ARC domain-containing disease resistance protein (.1) AT5G44510 74 / 4e-15 TAO1 target of AVRB operation1 (.1) AT5G45050 74 / 6e-15 WRKY ATWRKY16, TTR1 TOLERANT TO TOBACCO RINGSPOT NEPOVIRUS 1, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT3G04220 72 / 2e-14 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G44400 72 / 2e-14 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001038 [exp] 311 / 1e-107 AT1G69550 112 / 2e-27 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10008026 [exp] 229 / 1e-70 AT5G36930 204 / 1e-54 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10037406 [exp] 203 / 7e-60 AT5G36930 395 / 5e-116 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10020238 [exp] 194 / 1e-56 AT1G69550 391 / 7e-117 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10035674 [exp] 192 / 6e-56 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10001788 [exp] 181 / 1e-52 AT1G69550 142 / 2e-34 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10020237 [exp] 171 / 7e-50 AT1G69550 99 / 3e-21 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10004115 [exp] 167 / 2e-47 AT5G27970 689 / 0.0 ARM repeat superfamily protein (.1.2) Lus10000945 [exp] 164 / 4e-47 AT1G69550 112 / 3e-25 disease resistance protein (TIR-NBS-LRR class) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G030700 [exp] 75 / 2e-15 AT1G69550 602 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.005G030318 [exp] 70 / 1e-13 AT1G69550 673 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.004G088500 [exp] 69 / 3e-13 AT1G69550 647 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.013G097000 [exp] 67 / 9e-13 AT5G17680 571 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 67 / 1e-12 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.005G031101 [exp] 66 / 2e-12 AT5G17680 557 / 8e-178 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068300 [exp] 66 / 3e-12 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.013G098000 [exp] 64 / 1e-11 AT5G17680 575 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.005G031899 [exp] 63 / 3e-11 AT1G69550 469 / 6e-141 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.011G012750 [exp] 62 / 4e-11 AT5G36930 195 / 3e-52 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10041559 pacid=23146804 polypeptide=Lus10041559 locus=Lus10041559.g ID=Lus10041559.BGIv1.0 annot-version=v1.0 ATGAGGGCCTGCAGGTCAGTCATGAGACTGTCTGATGTATCGGTCCTCGAGAACCTGGAGACGCTTGATGTCAGTTGGTGCGTACAGTTGGTCGAGGTCA CAGGGCTCGAGAGGCTGAAATCGTTGCGAACCTTAGTAATGAAGGCCTGCAAGTCGGTCATGAGGCTACCTGATGTATCTGGCCTCGAGAACTTGGAGGT GCTTGATGTTAGCAGGTGCGCGCTTCTGGTCGAGGTCACAGGTGTTGGCAGATTGGGATCGTTGGAAGAGTTGAATCTGTCTGGATGTTGGTCGATTGGG GAGCTTCTAGACGTATCCGGTTTGAAGAATTTGGATGCTTTAGATGTAAGTGACTGCATAGAGTTGGTTAAGGTCACATGTTTAGAGAATTTGGGAATGT TAACCAAGTTAAACATGTTTGGTTGCAAGTCTTTAAGGGAGTTACCAGATATGTCTAGTTTGAAGAACCTAAGGGATTTGAATCTGAAGGGATGCTCGCA GGTGAAGACAGTGAAGGGGCTTGAGGGATTGGAAAATCTATGGGAGGTGGAAATGGGGAAAAGGTTAAAAGCTAAGGTTTGCTTGAAATTGGCTGCATCG AGTGCGATACTTGCACGAACGGTTCGTAGGGTCCTCAAGCAACGGAAGGATGTGAAAGAGATGAAAAGACTATTAGGATTGCGATAA
AA sequence Show only first row Show all	>Lus10041559 pacid=23146804 polypeptide=Lus10041559 locus=Lus10041559.g ID=Lus10041559.BGIv1.0 annot-version=v1.0 MRACRSVMRLSDVSVLENLETLDVSWCVQLVEVTGLERLKSLRTLVMKACKSVMRLPDVSGLENLEVLDVSRCALLVEVTGVGRLGSLEELNLSGCWSIG ELLDVSGLKNLDALDVSDCIELVKVTCLENLGMLTKLNMFGCKSLRELPDMSSLKNLRDLNLKGCSQVKTVKGLEGLENLWEVEMGKRLKAKVCLKLAAS SAILARTVRRVLKQRKDVKEMKRLLGLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69550			disease resistance protein (TI...		Lus10041559 [exp]	0	1
AT5G13800		CRN1, PPH	Co-regulated with NYE1, pheoph...		Lus10005320 [exp]	3.3	0.6555
AT1G08580			unknown protein		Lus10000388 [exp]	6.8	0.6511
AT1G18010			Major facilitator superfamily ...		Lus10009413 [exp]	14.0	0.6001
AT1G24420			HXXXD-type acyl-transferase fa...		Lus10025521 [exp]	14.5	0.5992
					Lus10025786 [exp]	15.6	0.5785
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10013919 [exp]	17.1	0.5892
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10013920 [exp]	18.7	0.5830
AT5G20810			SAUR-like auxin-responsive pro...		Lus10034888 [exp]	19.7	0.5684
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10014126 [exp]	20.0	0.5830
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10015241 [exp]	21.2	0.5830

Compare expression of checked genes

Lus10041559 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.