Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01910 545 / 0 AT-SO, ATSO, SOX sulfite oxidase (.1.2.3) AT1G77760 172 / 6e-48 GNR1, NIA1 nitrate reductase 1 (.1) AT1G37130 166 / 4e-46 NIA2-1, CHL3, B29, NR2, NIA2, ATNR2 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012532 [exp] 585 / 0 AT3G01910 616 / 0.0 sulfite oxidase (.1.2.3) Lus10032048 [exp] 538 / 0 AT3G01910 620 / 0.0 sulfite oxidase (.1.2.3) Lus10035213 [exp] 526 / 0 AT3G01910 615 / 0.0 sulfite oxidase (.1.2.3) Lus10035402 [exp] 169 / 5e-47 AT1G77760 1277 / 0.0 nitrate reductase 1 (.1) Lus10038977 [exp] 164 / 5e-45 AT1G77760 1397 / 0.0 nitrate reductase 1 (.1) Lus10027270 [exp] 162 / 1e-44 AT1G77760 1380 / 0.0 nitrate reductase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G330900 [exp] 548 / 0 AT3G01910 686 / 0.0 sulfite oxidase (.1.2.3) Potri.005G172400 [exp] 168 / 1e-46 AT1G37130 1400 / 0.0 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) Potri.002G088600 [exp] 164 / 3e-45 AT1G77760 1394 / 0.0 nitrate reductase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00174 [flax] [poplar] Oxidored_molyb Oxidoreductase molybdopterin binding domain CL0159 [flax] [poplar] E-set PF03404 [flax] [poplar] Mo-co_dimer Mo-co oxidoreductase dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10041560 pacid=23146640 polypeptide=Lus10041560 locus=Lus10041560.g ID=Lus10041560.BGIv1.0 annot-version=v1.0 ATGCCTGGAATTAAGGGCCCATCCGATTATTCCCAGGAGCCACCTCGTCATCTATCTCTCCTCGTCAATGCAAAGCAACCCTTCAATGCTGAACCACCTC GTTCGGCCTTGGTAGACTCATATGTCACACCTGTGGACCTCTTCTACAAGAGAAATCATGGTCCCATTCCGGTGGTGGATGATATCGAAAGATATTCTGT TTCTTTCAAAGGGTTGATTGAGACCCACAAGGAGCTCACAATGAAGGATATCAGGTCGCTTCCAAAGTACAATGTCGCGGCCACCTTGCAGTGTGCTGGT AACAGGAGGACTGCCATGAGCAAAGTAAAAACAGTTAAAGGAGTTGGATGGGACATCTCTGCCATAGGAAATGCTGTTTGGGGTGGTGCCAAATTGGCCG ATGTTCTTGAACTTGTCGGGATACCTAAGTTCACCGCCGCCACCAAATCTGGTGGGAAGCACGTTGAGTTTGTTAGCATTGATAAGTGCAAGGAGGAGAA CGGGGGTCCCTACAAGGCATCAATTCCACTCATTCAGGCCACAAATCCTGAAGCTGATGTTTTACTTGCTTACGAGATGAATGGAGAGACTTTAAACAGG GATCATGGTTATCCATTAAGGGTGGTTGTCCCAGGTGTTATAGGTGCGCGTTCTGTTAAATGGTTGGATTCCATCAACATATTAGCTGGAGAATGTCAGG GCTTCTTTATGCAAAAGGATTACAAAATGTTTCCACCATCTGTGAACTGGGATAACATCAATTGGTCATCAAGGAGGCCCCAAATGGATTTCCCTGTACA GTGTGCCATTTGCTCCTTAGAGGATCAGACTATTGTGAAGCACCCTGGGAAGGAGGTCACAGTGCGCGGATATGCGGTGTCAGGAGGCGGACGTGGTATC GAGAGAGTTGATGTGTCGATCGATGGTGGTAAAACCTGA
AA sequence Show only first row Show all	>Lus10041560 pacid=23146640 polypeptide=Lus10041560 locus=Lus10041560.g ID=Lus10041560.BGIv1.0 annot-version=v1.0 MPGIKGPSDYSQEPPRHLSLLVNAKQPFNAEPPRSALVDSYVTPVDLFYKRNHGPIPVVDDIERYSVSFKGLIETHKELTMKDIRSLPKYNVAATLQCAG NRRTAMSKVKTVKGVGWDISAIGNAVWGGAKLADVLELVGIPKFTAATKSGGKHVEFVSIDKCKEENGGPYKASIPLIQATNPEADVLLAYEMNGETLNR DHGYPLRVVVPGVIGARSVKWLDSINILAGECQGFFMQKDYKMFPPSVNWDNINWSSRRPQMDFPVQCAICSLEDQTIVKHPGKEVTVRGYAVSGGGRGI ERVDVSIDGGKT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01910		AT-SO, ATSO, SO...	sulfite oxidase (.1.2.3)		Lus10041560 [exp]	0	1
AT3G01910		AT-SO, ATSO, SO...	sulfite oxidase (.1.2.3)		Lus10041561 [exp]	1.0	0.8772
AT2G20990		SYT1, NTMC2TYPE...	SYNAPTOTAGMIN 1, ARABIDOPSIS T...		Lus10019782 [exp]	2.0	0.7580
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10030041 [exp]	6.5	0.6675
AT1G67570			Protein of unknown function (D...		Lus10011371 [exp]	10.2	0.7429
AT1G29530			unknown protein		Lus10025373 [exp]	11.5	0.7718
AT3G03800		ATSYP131, SYP13...	syntaxin of plants 131 (.1)		Lus10015121 [exp]	12.0	0.7676
AT2G22260			oxidoreductase, 2OG-Fe(II) oxy...		Lus10038746 [exp]	13.5	0.6901
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10026408 [exp]	16.2	0.6669
AT5G05820			Nucleotide-sugar transporter f...		Lus10016446 [exp]	16.5	0.6712
AT3G26100			Regulator of chromosome conden...		Lus10006455 [exp]	19.4	0.7204

Compare expression of checked genes

Lus10041560 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.