Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01900 598 / 0 CYP94B2 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) AT3G48520 566 / 0 CYP94B3 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) AT5G63450 559 / 0 CYP94B1 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) AT2G27690 388 / 3e-130 CYP94C1 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) AT3G56630 381 / 2e-127 CYP94D2 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) AT1G34540 377 / 9e-126 CYP94D1 "cytochrome P450, family 94, subfamily D, polypeptide 1", cytochrome P450, family 94, subfamily D, polypeptide 1 (.1) AT1G24540 318 / 2e-102 CYP86C1 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) AT1G13140 309 / 7e-99 CYP86C3 "cytochrome P450, family 86, subfamily C, polypeptide 3", cytochrome P450, family 86, subfamily C, polypeptide 3 (.1.2) AT5G23190 308 / 4e-98 CYP86B1 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) AT4G00360 306 / 2e-97 ATT1, CYP86A2 "cytochrome P450, family 86, subfamily A, polypeptide 2", ABERRANT INDUCTION OF TYPE THREE 1, cytochrome P450, family 86, subfamily A, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012531 [exp] 961 / 0 AT3G01900 592 / 0.0 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) Lus10033853 [exp] 424 / 5e-144 AT5G63450 474 / 7e-164 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10014741 [exp] 422 / 3e-143 AT5G63450 461 / 1e-158 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10014742 [exp] 408 / 1e-137 AT5G63450 451 / 8e-155 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10033852 [exp] 394 / 4e-132 AT5G63450 457 / 4e-157 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10036024 [exp] 353 / 6e-116 AT3G56630 380 / 3e-127 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Lus10017394 [exp] 301 / 1e-95 AT5G23190 739 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10038896 [exp] 299 / 4e-95 AT2G45510 582 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10010193 [exp] 298 / 1e-94 AT5G23190 741 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G331100 [exp] 705 / 0 AT3G01900 597 / 0.0 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) Potri.012G096800 [exp] 637 / 0 AT3G48520 611 / 0.0 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.002G042100 [exp] 432 / 5e-147 AT3G48520 451 / 1e-154 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.005G220900 [exp] 427 / 5e-145 AT3G48520 414 / 2e-140 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.005G220700 [exp] 426 / 7e-145 AT3G48520 436 / 4e-149 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.002G042200 [exp] 424 / 7e-144 AT5G63450 442 / 3e-151 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Potri.016G031700 [exp] 401 / 4e-135 AT3G56630 629 / 0.0 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Potri.010G236700 [exp] 399 / 2e-134 AT2G27690 576 / 0.0 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) Potri.009G145400 [exp] 395 / 7e-133 AT2G27690 622 / 0.0 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) Potri.004G185300 [exp] 387 / 8e-130 AT2G27690 604 / 0.0 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10041562 pacid=23146818 polypeptide=Lus10041562 locus=Lus10041562.g ID=Lus10041562.BGIv1.0 annot-version=v1.0 ATGAACTTCCTATCTCTTCCCTTCATCTACCTCTCCCTCCTATGCTCTCTCCTCACCACCTTCATCTCCTTCAACCTCCGCCGCCGACCTCCCAAAACCT CCGTCAACAACAACCGCCACGGACCCCTGACGTACCCTCTCATCGGCTGCCTGATTTCCTTTTACAAGAATCGCCGCCGTCTGCTAGACTGGTACACAAC CCTCCTCTCTCAATCACCAACCAACACTATCGTCATAAACCGGCTAGGAGCCAGGCGAACCATCGTAACAGCGAACCCAGAAAATGTCGAATATATCCTC AAAACCAACTTCCCCAACTTCCCTAAGGGCAAGCCCTTCACAGAGATCCTCGGGGACTTTCTTGGGTACGGCATTTTCAACGTCGACGGGGAGGCGTGGC GGACGCAGAGGAAGCTTGTTAGCCACGAGTTCACGGCGAAGTCGCTTAAGGAGTTCTTCATCATGACGTTGGAGGAAGAGGTGGAGAAGGAGCTAGTGCC CATGATGGACAGTTTGGCTGAGAGCTCTCAAGTTGTTGACTTGCAAGAGTTGTTAAGGAGGTTGGCTTTTAACATGGTTTGTAGGGTTTCTCTAGGTGTC GATCGATGTTGTTTAGATCCTTCGGTTCCAGCAAGGCCTCTCTCTCGAGCTTTCGATGCAGCATCGATGATCTGCGCGAGGAGAGGAGCCGAGCCATTGG TGCTGGTATGGAAGGTGAAAAGATTGCTTGGGGTTGGATCGGAGAGGGAGCTCAAGGAGGCTGTAGGTGAGGTTCATAGGGCGGTGTTTGAGATGATTGG TGAAAAGAAGCGTCAGTTGATTAGGGGGATCACAGCCGTTGATGATCAAGATCTTCTGTCGAGGTTGATAGTGGCGGGATACGACGACGTGGAGATTCGA GACATGGTGATCAGCTTCATCATGGCTGGGAGGGACACCACGTCAGCGGCAATGACGTGGCTATTCTGGCTGCTTTCTAGCCATCCGACTGTGGAGGAGC CGTTGGTTGAAGAAACGAGATTGGTTCGAAATGGAAGAGATAATGTGTATGAATCGCTGGAGGAGATGAAATTGTTAAAAGCCTGCCTAAGTGAGTCAAT GAGGCTGTATCCGCCGGTTGTGTGGGACTCCAAGCATGCCGTGGCCGACGATTTGCTGCCGGACAATACCCCAGTGAAGGCCGGGGATCGAGTGACATAC TTTCCGTACGGGATGGGGAGGATGGAGGGGCTTTGGGGGAAGGACTGGTTCGAGTTCAGACCGGAAAGATGGTTTGTTAATGACGAAGAAGATTCGAGCA ATAATAACAAGAGACCATCATCATCAACAAAAACAACAAGAGTGAATCATGGAAGAGAGCTGAAGAAGGTGTGTCCTTACAAGTATCCAGTATTTCAGGC AGGTCCAAGGGTATGCCTCGGGAAGGAGATGGCGTTCGTTCAGATGACATATGTGATGGCTTCGATTCTCCGGCGATTCGAGATCAGGCCGGTGAGCTCC GACAAGCCGGTCTTCGTGCCGTTGTTGACCGCTCACATGGCCGGCGGGTTGAATGTCCTAGTCAAGAAAAGAGAAGTCGCCAAGACATGTTGA
AA sequence Show only first row Show all	>Lus10041562 pacid=23146818 polypeptide=Lus10041562 locus=Lus10041562.g ID=Lus10041562.BGIv1.0 annot-version=v1.0 MNFLSLPFIYLSLLCSLLTTFISFNLRRRPPKTSVNNNRHGPLTYPLIGCLISFYKNRRRLLDWYTTLLSQSPTNTIVINRLGARRTIVTANPENVEYIL KTNFPNFPKGKPFTEILGDFLGYGIFNVDGEAWRTQRKLVSHEFTAKSLKEFFIMTLEEEVEKELVPMMDSLAESSQVVDLQELLRRLAFNMVCRVSLGV DRCCLDPSVPARPLSRAFDAASMICARRGAEPLVLVWKVKRLLGVGSERELKEAVGEVHRAVFEMIGEKKRQLIRGITAVDDQDLLSRLIVAGYDDVEIR DMVISFIMAGRDTTSAAMTWLFWLLSSHPTVEEPLVEETRLVRNGRDNVYESLEEMKLLKACLSESMRLYPPVVWDSKHAVADDLLPDNTPVKAGDRVTY FPYGMGRMEGLWGKDWFEFRPERWFVNDEEDSSNNNKRPSSSTKTTRVNHGRELKKVCPYKYPVFQAGPRVCLGKEMAFVQMTYVMASILRRFEIRPVSS DKPVFVPLLTAHMAGGLNVLVKKREVAKTC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01900		CYP94B2	"cytochrome P450, family 94, s...		Lus10041562 [exp]	0	1
AT3G14110		FLU	FLUORESCENT IN BLUE LIGHT, Tet...		Lus10037686 [exp]	1.4	0.8004
AT3G51840		ATG6, ATSCX, AC...	acyl-CoA oxidase 4 (.1)		Lus10027811 [exp]	4.0	0.7767
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10028738 [exp]	5.3	0.7986
AT1G75450		ATCKX6, ATCKX5,...	CYTOKININ OXIDASE 6, ARABIDOPS...		Lus10024289 [exp]	9.5	0.7382
AT4G17486			PPPDE putative thiol peptidase...		Lus10043293 [exp]	13.8	0.7732
AT4G14640		CAM8, AtCML8	calmodulin-like 8, calmodulin ...		Lus10041179 [exp]	14.5	0.7446
AT1G59960			NAD(P)-linked oxidoreductase s...		Lus10029208 [exp]	14.7	0.7125
AT1G30130			unknown protein		Lus10028119 [exp]	16.7	0.6923
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10004085 [exp]	21.8	0.7110
AT5G06440			unknown protein		Lus10013601 [exp]	26.8	0.6844

Compare expression of checked genes

Lus10041562 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.