Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28345 1736 / 0 MDR13, ABCB15 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) AT3G28390 1616 / 0 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT3G28380 1610 / 0 ABCB17, PGP17 ATP-binding cassette B17, P-glycoprotein 17 (.1) AT3G28415 1598 / 0 ABCB22 ATP-binding cassette B22, ABC transporter family protein (.1) AT3G28360 1597 / 0 ABCB16, PGP16 ATP-binding cassette B16, P-glycoprotein 16 (.1) AT3G28860 1040 / 0 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT2G36910 994 / 0 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT4G25960 971 / 0 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1) AT1G10680 969 / 0 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT1G02520 960 / 0 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039458 [exp] 2109 / 0 AT3G28345 1835 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10005839 [exp] 2093 / 0 AT3G28345 1834 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10012959 [exp] 1248 / 0 AT3G28345 1325 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10039533 [exp] 1244 / 0 AT3G28345 1288 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10024162 [exp] 1242 / 0 AT3G28345 1280 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10043069 [exp] 1145 / 0 AT3G28390 1232 / 0.0 ATP-binding cassette B18, P-glycoprotein 18 (.1) Lus10030674 [exp] 1029 / 0 AT3G28860 2271 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10005249 [exp] 1025 / 0 AT3G28860 2267 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10023929 [exp] 1021 / 0 AT2G36910 2300 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G074000 [exp] 1839 / 0 AT3G28345 1831 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G085000 [exp] 1764 / 0 AT3G28345 1774 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.018G087100 [exp] 1295 / 0 AT3G28345 1259 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.006G074400 [exp] 1266 / 0 AT3G28345 1243 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.006G074101 [exp] 1235 / 0 AT3G28345 1231 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.018G141400 [exp] 1214 / 0 AT3G28345 1204 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.011G133800 [exp] 1208 / 0 AT3G28345 1268 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.001G417600 [exp] 1203 / 0 AT3G28345 1241 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.018G141300 [exp] 1147 / 0 AT3G28345 1093 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G081100 [exp] 1052 / 0 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10041565 pacid=23146916 polypeptide=Lus10041565 locus=Lus10041565.g ID=Lus10041565.BGIv1.0 annot-version=v1.0 ATGGGTGGTGGTGGGGATGATCAGGAGATAAGGAATAAAAAGAAGGTGAATCAGGGAAGTGGCATAGGGTCGATGAAGACTATATTTATGCATGCAGATA GAGTGGATTTGCTTCTGATGATTTTGGGATGCATTGGCTCCATTGGAGATGGATGTTCTACCCCACTCATGTTATTGGTTACCAGCAAGTTCATGAACAA CATCGGTAGCTCCTCCACCAGCAATGGTTCTTCTATGGACGTTTTTACACACAGCATTAACATGAACTCGCTAGCTCTTTGTTACTTGGCTTGTGCGCAA TGGATCCTCTGTTTCATGGAGGGATATTGTTGGAGTAGAACAGGGGAGAGGCAAGCTACAAGAATGAGGGCAAGATATCTGAAAGCTGTCCTGAGACAAG AAGTCGGTTACTTTGATTTGCATGCAACAAACACTGCTGACGTCATCACCAGCGTCTCTAATGACACTCTTGTTATCCAAGATGTCCTCAGTGAAAAGGT GCCCAACTTGTTGATGAATTCAACCACCTTCGTCTCCTCGTACCTGGTCGGGCTGGCGCTGCTGTGGGAGTTGGCGGTTGTCGGGATTCCGTTCATTGTG ATTCTGGTGATACCGGGAATCATGTACGGGAGGACTCTGATGGTGGTGGCGAGGAAGTTGCGAGACGAGTACAACAAGGCAGGGAACATAGCCGAGCAGG CGATTTCTTCGGTTAGAACTGTGTACGCGTTCGTCGCCGAGGAGAAGACAACCGCTGCTTACTCCGCAGCGTTGGAGCTGTCGGTGAAATTGGGGCTGAA GCAAGGGTTGGCTAAAGGACTCGCTGTGGGAAGTAACGGCGTCGTGTTTGTTATTTGGGCCTTCATGTGTTACTACGGCACCAGAATGGTTATGTACCAC GGCGCTCAAGGCGGTACTGTGTTTGCTGTCGGAGCTACTATTGCTGTTGGCGGATTGGCACTTGGGACTGGATTATCGAACCTGACGTACCTGTCAGAAG CATGTTCATCAGGGGAAAGGATCCAGCAAGTGATAAAGCGAGTCCCCAAGATAGACGTGGAGAATCCAGATGGAGAAATCCTGGAAAACGTGAGGGGAGA GGTTGAATTCAGGAAGGTGCAATTTGCATACCCATCAAGGCCAGATACCATTATTTTAACAGATTTTGACCTGAAAGTACCATCAGGAAAGACTGTAGCT CTAGTTGGCGGGAGTGGATCAGGGAAGTCAACAGTGATAGCACTGTTGCAGAGGTTTTACGATCCATCAGGTGGTGAGATACTGATCGACGGAGTTGGTA TAGAGAAATTGCAGCTGAAGTGGGTGAGGTCTCAGATGGGTCTGGTGAGCCAAGAACCAGCCTTGTTTGCTACGTCAATAAAGGAGAACATACTTTTTGG AAAGGAAGATGCTTCCATGGAAGAGATTGTGGAAGCTGCCAAAGCTGCTAATGCTCATAACTTCATATCTCAGTTGCCTCAGGGATATGATACCCAGGTT GGGGAGAGAGGAGTGCAAATGTCAGGAGGGCAAAAGCAGAGAATAGCAATCGCAAGAGCAGTGGTCAAAGCGCCAAGGATTCTCCTCCTCGACGAAGCGA CCAGCGCACTCGACTCCGAATCGGAAAGGGTTGTTCAGGCAGCGCTAGACAAGGCAGCAGTCGGCAGGACCACCATCATTGTTGCTCACCGCCTATCTAC CGTCCGTGATGCAGACTTGATCGCAGTGGTGCAGAATGGCCACGTCGCAGAACTAGGATCTCACAATGACCTCATCCAAAACCCTGACGGCCTATACACC TCACTCGTCCACCTTCAACAAACTGACCAGGAAGACTACAATAATAATAATATTGACAGTGGACTGACCGTTAATGACATGAACAACTGTAGCAGGTCAA GCTCTGCCAATTCCATGGCACAAATGACGAATATACCCCTGGATGATCAGGAGCAGGAGGAGTTTATTTCAGTGCCATCATTCAGAAGGTTGTTGGCGCT GAACCTGCCGGAGTGGAAGCAGGGGATGATGGGATGTGCTGGCGCGATTCTATTCGGTGGGATTCAGCCCACATATTCCTGCACATTGGGATCTATGGTA TCAGTGTTTTTTCTTACGGACCACGCTGAGATGAAGCGAAAGATGTCGGTGTACTCGTTGAGATTTCTTGGCCTGGCGGTTTCTTCCATGGTTGTTAACC TTGTTCAGCATTACAACTTCGCTTACATGGGAGAGTGTCTCACCAAGAGGATCAGGGAGCGTATGTTGTCGAAGATTCTAACTTTTGAAGTCGGGTGGTT TGACCAGAACCACAACTCCAGCGGAGCTGTTTGCTCTAGACTTGCCAATGATGCCAATGTGGTGAGATCCGTCGTCGGAGACCGGATGGGACTAATAATC CAAACAATCTCAAGCGTAATAATCGCCTGGACAATGGGACTAGTCATTTCATGGCGGCTGGCAATAGTGATGATCGTCGTCCAACCATTGATCATAGTCT GCTTCTACACCCGACGTGTCCTCTTGAAAAATATGTCCGAAAGGGCCATCAAGCTCCAAGAAGAGAGTGGCAAGGTAGCTGCGGAGGCCGTCTCCAATCT CCGCACCATTGCCGCCTTCTCCTCCCAAGACCGCGTACTCGGAATTCTGGAAAAAACCCAACTAGGCCCACGTAAAGAAAGCTTTCGCCAGTCCTGGTAC GCTGGGATCGGCCTCGGCACTTCCCAGAGCCTCGGGTTGTTAACCTGGGCCCTCGACTTCTGGTACGGCGGCAGGCTCGTCTCCCAGGGCAACATCACTG TCAAAGCCCTCTTCAAGACCTTTTTTATCCTCGTCAGCACAGGTCGGGTCATAGCTGATGCTGGAGCCATGACTTCCGATCTCGCCAAGGGATCCGACGC TGTGGGATCCGTTTTTGCTGTCTTGGACCGGTACACGAGTATCAAGCCGGACGACGACGAAGGGCACAAGCCGGAGAAGGTAACAGGTCTGATTGAGCTT CGAGATATTGACTTTGCTTACCCGGGTCGGCCAAATGTTGTGATATTTAAAGGATTCTCGATTCGGATCGAGGCCGGGAAATCAACGGCTTTAGTTGGGC AAAGTGGGTCGGGTAAGTCGACAATCATCGGGCTGATCGAGCGGTTCTACGATCCGGTAAGGGGAATCGTGAAGATCGACGGTCGAGATCTAAGGTCATA CCATCTACGGTCACTAAGGCAACACATGGCTCTGGTCAGCCAGGAGCCGACTCTGTTCGCGGGGACGATAAGGGAGAACATCACATACGGAGCTGCCACG TCGGTTGATGAATCGGAGATTGTGGAGGCGGCAAAGGCGGCGAATGCTCATGACTTCGTGACGGGCCTGAAGGACGGGTACGACACGTGGTGCGGCGACA GAGGGGTGCAGCTTTCAGGAGGGCAAAAGCAGAGGATTGCGATTGCGAGAGCCATACTGAGGAATCCGACTGTGCTTTTGCTTGATGAGGCTACGAGTGC GCTGGATACTAGGTCGGAGAAGGTGGTTCAGGAAGCGCTGGAGCGAGTGATGGTTGGACGGACGAGCGTGGTGGTGGCTCACCGACTTAGTACGATTCAA AACTGCGATATGATTGCTGTGTTGGACAAAGGAAAAGTTGTTGAGAAGGGGACTCATTCGTCCTTGTTGGCGAAAGGTCCTACCGGAGTTTATTTTTCAT TGGTTAGTCTACAGAGGACGCCAACTGCAACGTAA
AA sequence Show only first row Show all	>Lus10041565 pacid=23146916 polypeptide=Lus10041565 locus=Lus10041565.g ID=Lus10041565.BGIv1.0 annot-version=v1.0 MGGGGDDQEIRNKKKVNQGSGIGSMKTIFMHADRVDLLLMILGCIGSIGDGCSTPLMLLVTSKFMNNIGSSSTSNGSSMDVFTHSINMNSLALCYLACAQ WILCFMEGYCWSRTGERQATRMRARYLKAVLRQEVGYFDLHATNTADVITSVSNDTLVIQDVLSEKVPNLLMNSTTFVSSYLVGLALLWELAVVGIPFIV ILVIPGIMYGRTLMVVARKLRDEYNKAGNIAEQAISSVRTVYAFVAEEKTTAAYSAALELSVKLGLKQGLAKGLAVGSNGVVFVIWAFMCYYGTRMVMYH GAQGGTVFAVGATIAVGGLALGTGLSNLTYLSEACSSGERIQQVIKRVPKIDVENPDGEILENVRGEVEFRKVQFAYPSRPDTIILTDFDLKVPSGKTVA LVGGSGSGKSTVIALLQRFYDPSGGEILIDGVGIEKLQLKWVRSQMGLVSQEPALFATSIKENILFGKEDASMEEIVEAAKAANAHNFISQLPQGYDTQV GERGVQMSGGQKQRIAIARAVVKAPRILLLDEATSALDSESERVVQAALDKAAVGRTTIIVAHRLSTVRDADLIAVVQNGHVAELGSHNDLIQNPDGLYT SLVHLQQTDQEDYNNNNIDSGLTVNDMNNCSRSSSANSMAQMTNIPLDDQEQEEFISVPSFRRLLALNLPEWKQGMMGCAGAILFGGIQPTYSCTLGSMV SVFFLTDHAEMKRKMSVYSLRFLGLAVSSMVVNLVQHYNFAYMGECLTKRIRERMLSKILTFEVGWFDQNHNSSGAVCSRLANDANVVRSVVGDRMGLII QTISSVIIAWTMGLVISWRLAIVMIVVQPLIIVCFYTRRVLLKNMSERAIKLQEESGKVAAEAVSNLRTIAAFSSQDRVLGILEKTQLGPRKESFRQSWY AGIGLGTSQSLGLLTWALDFWYGGRLVSQGNITVKALFKTFFILVSTGRVIADAGAMTSDLAKGSDAVGSVFAVLDRYTSIKPDDDEGHKPEKVTGLIEL RDIDFAYPGRPNVVIFKGFSIRIEAGKSTALVGQSGSGKSTIIGLIERFYDPVRGIVKIDGRDLRSYHLRSLRQHMALVSQEPTLFAGTIRENITYGAAT SVDESEIVEAAKAANAHDFVTGLKDGYDTWCGDRGVQLSGGQKQRIAIARAILRNPTVLLLDEATSALDTRSEKVVQEALERVMVGRTSVVVAHRLSTIQ NCDMIAVLDKGKVVEKGTHSSLLAKGPTGVYFSLVSLQRTPTAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10041565 [exp]	0	1
AT2G42570		TBL39	TRICHOME BIREFRINGENCE-LIKE 39...		Lus10002198 [exp]	12.5	0.7996
AT2G23945			Eukaryotic aspartyl protease f...		Lus10023451 [exp]	13.6	0.7574
AT4G19420			Pectinacetylesterase family pr...		Lus10033305 [exp]	14.3	0.7637
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Lus10017288 [exp]	21.4	0.7387
AT1G71380		ATCEL3 ,ATGH9B3	ARABIDOPSIS THALIANA GLYCOSYL ...		Lus10025880 [exp]	26.2	0.7236
AT5G45340		CYP707A3	"cytochrome P450, family 707, ...		Lus10018898 [exp]	26.5	0.7287
AT5G49130			MATE efflux family protein (.1...		Lus10009788 [exp]	26.8	0.7382
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10012552 [exp]	29.1	0.7296
AT4G34490		ATCAP1	cyclase associated protein 1 (...		Lus10040460 [exp]	37.5	0.7273
AT5G12870	MYB	ATMYB46	myb domain protein 46 (.1)		Lus10029520 [exp]	38.3	0.7368

Compare expression of checked genes

Lus10041565 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.