Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27180 629 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012527 [exp] 880 / 0 AT3G27180 690 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10009743 [exp] 46 / 7e-05 AT3G21300 806 / 0.0 RNA methyltransferase family protein (.1) Lus10000172 [exp] 45 / 9e-05 AT3G21300 420 / 3e-146 RNA methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G331900 [exp] 674 / 0 AT3G27180 634 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G195300 [exp] 44 / 0.0002 AT3G21300 817 / 0.0 RNA methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05175 [flax] [poplar] MTS Methyltransferase small domain
Representative CDS sequence Show only first row Show all	>Lus10041566 pacid=23146815 polypeptide=Lus10041566 locus=Lus10041566.g ID=Lus10041566.BGIv1.0 annot-version=v1.0 ATGCATCTCTGTTCTTTATCTTCTCGCCTTCCTTTCTCTCCTCCCTTCACCTGCCGCGCCACTGCTTCTGCCACTCTTCCCCTCGCCTCTCCTGCTGCTT CTTTCAAATCCCCCAGGGGACGGCCGCCGACACTCAAGTTAGAAACGAAGGACAAGTGCGCTCTTGACTGCCCTCACTTCCAATCATGCTCCGGCTGCAC TCAGGAGCTCAATCTCCACCGCCCGGCTGTCGTCGACGAGGCAGCTCAGTTTTTCAGTGAGCTAGGAGTATCGGATTTCTCCTTCGACAGTTGTAGACTT TGGGGATGGAGGTGTCGAGCGAAGCTGGCAATTCGCGCTCATCATCCAAGAATCAATGCTGCCGTTGAACTGCTGAGAAAAGGTATTATCGAGTTGCGGA TTCTTCCCTACGATGAAGACCTAGGAACGGGGGACTTGCGATACGTTCAAATGGCTGTTACTACACACAACACATCACTTCCTGCCTCTGATAGATATAG AAATGGTAAAGTGCAGGTTTCTCTTGTTTGGAATACAAGAAACGAGAACTCTCCTAGTACTGAAAAGTTATCCGCCTTAGCTGAGTTTATTTGGAGAAAT GGTGGACCAAAGAGTGACGATGACATTATTCACTCTGTATGGGCTAATTTCCAGACGTCATCTAACAATGTTATATTTGGGAATCGGTGGAGACATCTCT TGGGAGAAAGGGACTTCTGGGAGCATGTTGGAGGCATTGATGTATCCCTGGTTCCGTCTGGCTTTGGACAAGCTAATACACGAGCTTTTGAATCATTGCT GCGGAAGTTGCATAAATATGTACCTCAAGGAGCAACTGTTGCCGATTTGTATGCTGGAGCTGGAGTAATTGGGTTGTCTGTAGCTGCCAATAGGAAATGC AGATCTGTCAAGTGCATTGAGGTTAATAAAGAGTCCAAACTATCCTTTGAGAAGACAGTTGAACGTCTTCCAAAGTCTGTAGAGGGCAGCATCAGCTGGC ATCAAGCAGACACTTCTGTTGATCCGATTTCTTGGCTTGTGGGCTCTGAAGTAGTCATTGTCGATCCACCAAGAAAGGGATTGGATGCATCTCTTGTTGA TGCATTAAAGACTATCTCATCTGCCAGCTTCAGAACCAAGTCATCCACCAATAGTTCTCAGGTTAAAGAAGAAAAAAGACCCTGGGTTTTGCGTGCAAAA GAATCTTCAGTCCATGTTGGGAGCTCAGCAACTTTAGATGAACCACGAATCCTTCCTCAAACACTGATCTATATAAGCTGTGGGTGGGATAGCTTCAAAG AGGATTGCAAATCCTTGTTGTCTACAAAGAAATGGCGGCTGGAAGAAGCACATGGGTTTAATTTCTTTCCTGGTACTCAGAGCATTGAGGTTCTGGCTGT CTTCAGAAGGAGTCGAGAAGCTAGCCACAAGAAAAGGAAACCCGGAAAGAAGAAAAAACACTCTTGA
AA sequence Show only first row Show all	>Lus10041566 pacid=23146815 polypeptide=Lus10041566 locus=Lus10041566.g ID=Lus10041566.BGIv1.0 annot-version=v1.0 MHLCSLSSRLPFSPPFTCRATASATLPLASPAASFKSPRGRPPTLKLETKDKCALDCPHFQSCSGCTQELNLHRPAVVDEAAQFFSELGVSDFSFDSCRL WGWRCRAKLAIRAHHPRINAAVELLRKGIIELRILPYDEDLGTGDLRYVQMAVTTHNTSLPASDRYRNGKVQVSLVWNTRNENSPSTEKLSALAEFIWRN GGPKSDDDIIHSVWANFQTSSNNVIFGNRWRHLLGERDFWEHVGGIDVSLVPSGFGQANTRAFESLLRKLHKYVPQGATVADLYAGAGVIGLSVAANRKC RSVKCIEVNKESKLSFEKTVERLPKSVEGSISWHQADTSVDPISWLVGSEVVIVDPPRKGLDASLVDALKTISSASFRTKSSTNSSQVKEEKRPWVLRAK ESSVHVGSSATLDEPRILPQTLIYISCGWDSFKEDCKSLLSTKKWRLEEAHGFNFFPGTQSIEVLAVFRRSREASHKKRKPGKKKKHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27180			S-adenosyl-L-methionine-depend...		Lus10041566 [exp]	0	1
AT3G27180			S-adenosyl-L-methionine-depend...		Lus10012527 [exp]	1.0	0.9595
AT5G15700			DNA/RNA polymerases superfamil...		Lus10031952 [exp]	4.0	0.9535
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Lus10023319 [exp]	4.1	0.9043
AT5G14260			Rubisco methyltransferase fami...		Lus10022333 [exp]	5.7	0.9211
AT3G01370		ATCFM2	Arabidopsis thaliana CRM famil...		Lus10039467 [exp]	5.9	0.9332
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10001060 [exp]	7.5	0.9274
AT5G57930		APO2, EMB1629	embryo defective 1629, ACCUMUL...		Lus10019959 [exp]	8.5	0.9188
AT4G04350		EMB2369	EMBRYO DEFECTIVE 2369, tRNA sy...		Lus10015552 [exp]	8.5	0.9322
AT3G18390		EMB1865	embryo defective 1865, CRS1 / ...		Lus10009671 [exp]	8.5	0.9341
AT5G15700			DNA/RNA polymerases superfamil...		Lus10035150 [exp]	8.7	0.9373

Compare expression of checked genes

Lus10041566 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.