Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27170 413 / 7e-140 ATCLC-B, CLC-B chloride channel B (.1) AT5G40890 389 / 4e-132 ATCLCA, CLCA, ATCLC-A CHLORIDE CHANNEL-A, chloride channel A (.1.2) AT5G33280 235 / 1e-71 Voltage-gated chloride channel family protein (.1) AT5G49890 214 / 1e-63 ATCLC-C, CLC-C chloride channel C (.1) AT5G26240 167 / 1e-46 ATCLC-D, CLC-D chloride channel D (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012526 [exp] 525 / 0 AT3G27170 1264 / 0.0 chloride channel B (.1) Lus10007433 [exp] 235 / 1e-71 AT5G49890 1190 / 0.0 chloride channel C (.1) Lus10024466 [exp] 233 / 8e-71 AT5G49890 1189 / 0.0 chloride channel C (.1) Lus10038118 [exp] 230 / 4e-69 AT5G33280 1140 / 0.0 Voltage-gated chloride channel family protein (.1) Lus10002453 [exp] 166 / 4e-46 AT5G26240 1278 / 0.0 chloride channel D (.1) Lus10010531 [exp] 148 / 8e-40 AT5G26240 1242 / 0.0 chloride channel D (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G331700 [exp] 457 / 6e-157 AT3G27170 1259 / 0.0 chloride channel B (.1) Potri.006G064000 [exp] 244 / 5e-75 AT5G33280 1181 / 0.0 Voltage-gated chloride channel family protein (.1) Potri.018G124100 [exp] 231 / 4e-70 AT5G33280 1167 / 0.0 Voltage-gated chloride channel family protein (.1) Potri.004G228300 [exp] 225 / 6e-68 AT5G49890 983 / 0.0 chloride channel C (.1) Potri.003G001500 [exp] 225 / 7e-68 AT5G49890 950 / 0.0 chloride channel C (.1) Potri.T046200 [exp] 222 / 1e-66 AT5G49890 947 / 0.0 chloride channel C (.1) Potri.018G138100 [exp] 220 / 6e-66 AT5G49890 935 / 0.0 chloride channel C (.1) Potri.010G090100 [exp] 165 / 5e-46 AT5G26240 1149 / 0.0 chloride channel D (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [flax] [poplar] CBS CBS domain PF00654 [flax] [poplar] Voltage_CLC Voltage gated chloride channel
Representative CDS sequence Show only first row Show all	>Lus10041567 pacid=23146920 polypeptide=Lus10041567 locus=Lus10041567.g ID=Lus10041567.BGIv1.0 annot-version=v1.0 ATGGGATCAGCTTACGGCCGACTGCTTGGTCTCGCGATGGGATCTTACACCAAAATTGACCAAGGACTTTATGCAGTTCTTGGTGCAGCTTCACTTATGG CTGGATCAATGAGAATGACGGTATCTCTTTGTGTGATTTTCCTAGAACTCACAAACAACCTCTTGCTATTACCCATAACGATGATAGTTCTACTCATAGC CAAATCAGTTGGAGACAGTTTCAATCCAAGTATATACGACATTATCCTAGAACTAAAAGGCTTGCCTTTCTTGGATGCCAATCCTGAGCCATGGATGAGA AACTTCACGGTTGGAGAGCTTATTGAATCCAAACCGGCGGTAATTACCTTATGCGGGATAGAGAAGGTGTCTCGAATCGTCGAAATACTTAAGAACACAA CACACCATGGCTTCCCAGTTGTGGATGAAGGAGTGATGCCACCGGGGGGACTCACAGCTGGAGCAACAGAACTGAATGGGCTAATCCTGAGAGCTCACCT GGTTCAAGTGTTGAAGAAGAAGTGGTTCCTGCCAGAGAAAAGAAGAACAGATGAGTGGGAAGTGAGAGAAAGATTCTCATGGATTGAGCTTGCTGAGAGA GAAGTAACGATTGAAGAAGTGACAGTTACCAGGGCAGAAATGGACATGTACGTTGACTTGCATCCCTTCACCAATACAACTCCTTTCACAGTGGTCGAGA GCATGTCAGTAGCAAAGGCAATGGTGCTATTTAGGCAAGTCGGTCTTCGACACTTGCTCGTAGTTCCCAAGTATCAAGCTGCAGGGATTCCTCCTGTGGT TGGTGTTCTGACCAGACAGGATTTAAGAGCATACAACATCTTGACAGCCTTCCCTCATCTGGCAAGATCTAAGTGCAGAGGAAAGCAGAATTAA
AA sequence Show only first row Show all	>Lus10041567 pacid=23146920 polypeptide=Lus10041567 locus=Lus10041567.g ID=Lus10041567.BGIv1.0 annot-version=v1.0 MGSAYGRLLGLAMGSYTKIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKSVGDSFNPSIYDIILELKGLPFLDANPEPWMR NFTVGELIESKPAVITLCGIEKVSRIVEILKNTTHHGFPVVDEGVMPPGGLTAGATELNGLILRAHLVQVLKKKWFLPEKRRTDEWEVRERFSWIELAER EVTIEEVTVTRAEMDMYVDLHPFTNTTPFTVVESMSVAKAMVLFRQVGLRHLLVVPKYQAAGIPPVVGVLTRQDLRAYNILTAFPHLARSKCRGKQN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27170		ATCLC-B, CLC-B	chloride channel B (.1)		Lus10041567 [exp]	0	1
AT5G40890		ATCLCA, CLCA, A...	CHLORIDE CHANNEL-A, chloride c...		Lus10041568 [exp]	1.4	0.7759
AT5G26250			Major facilitator superfamily ...		Lus10005870 [exp]	40.6	0.7245
AT4G08460			Protein of unknown function (D...		Lus10009772 [exp]	54.5	0.7346
AT2G34520		RPS14	mitochondrial ribosomal protei...		Lus10017877 [exp]	72.4	0.7213
AT5G01600		ATFER1	ARABIDOPSIS THALIANA FERRETIN ...		Lus10012233 [exp]	209.6	0.6689
AT4G36470			S-adenosyl-L-methionine-depend...		Lus10041776 [exp]	210.1	0.6871
AT5G67190	AP2_ERF	DEAR2	DREB and EAR motif protein 2 (...		Lus10009373 [exp]	266.8	0.6731
AT3G21640		FKBP42, UCU2, T...	ULTRACURVATA 2, TWISTED DWARF ...		Lus10029505 [exp]	292.9	0.6693

Compare expression of checked genes

Lus10041567 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.