Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40870 825 / 0 UKL1, ATUK/UPRT1 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) AT3G27190 799 / 0 UKL2 uridine kinase-like 2 (.1) AT4G26510 698 / 0 UKL4 uridine kinase-like 4 (.1.2) AT1G55810 690 / 0 UKL3 uridine kinase-like 3 (.1.2.3) AT3G27440 649 / 0 UKL5 uridine kinase-like 5 (.1) AT1G73980 97 / 4e-21 Phosphoribulokinase / Uridine kinase family (.1) AT1G26190 84 / 6e-17 Phosphoribulokinase / Uridine kinase family (.1) AT3G53900 73 / 2e-14 UPP, PYRR PYRIMIDINE R, uracil phosphoribosyltransferase (.1.2) AT1G32060 74 / 6e-14 PRK phosphoribulokinase (.1) AT2G01460 50 / 5e-06 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035216 [exp] 858 / 0 AT5G40870 850 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10032051 [exp] 695 / 0 AT5G40870 698 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10021310 [exp] 634 / 0 AT4G26510 753 / 0.0 uridine kinase-like 4 (.1.2) Lus10016989 [exp] 632 / 0 AT4G26510 761 / 0.0 uridine kinase-like 4 (.1.2) Lus10022289 [exp] 544 / 0 AT3G27440 625 / 0.0 uridine kinase-like 5 (.1) Lus10009040 [exp] 91 / 3e-19 AT1G73980 971 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10009678 [exp] 90 / 1e-18 AT1G73980 962 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10030919 [exp] 84 / 5e-17 AT1G26190 1007 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10030570 [exp] 84 / 7e-17 AT1G26190 1018 / 0.0 Phosphoribulokinase / Uridine kinase family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G069600 [exp] 840 / 0 AT5G40870 852 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Potri.001G332100 [exp] 825 / 0 AT5G40870 820 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Potri.001G467800 [exp] 706 / 0 AT1G55810 809 / 0.0 uridine kinase-like 3 (.1.2.3) Potri.011G165100 [exp] 702 / 0 AT4G26510 818 / 0.0 uridine kinase-like 4 (.1.2) Potri.017G071200 [exp] 640 / 0 AT3G27440 707 / 0.0 uridine kinase-like 5 (.1) Potri.015G055400 [exp] 91 / 4e-19 AT1G73980 953 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.008G110500 [exp] 87 / 5e-18 AT1G26190 933 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.010G134400 [exp] 87 / 9e-18 AT1G26190 968 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.006G091000 [exp] 80 / 2e-16 AT3G53900 379 / 7e-133 PYRIMIDINE R, uracil phosphoribosyltransferase (.1.2) Potri.001G134000 [exp] 75 / 2e-14 AT1G32060 699 / 0.0 phosphoribulokinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0533 [flax] [poplar] PRTase-like PF00156 [flax] [poplar] Pribosyltran Phosphoribosyl transferase domain CL0023 [flax] [poplar] P-loop_NTPase PF00485 [flax] [poplar] PRK Phosphoribulokinase / Uridine kinase family
Representative CDS sequence Show only first row Show all	>Lus10041569 pacid=23146615 polypeptide=Lus10041569 locus=Lus10041569.g ID=Lus10041569.BGIv1.0 annot-version=v1.0 ATGCCGGTCAAGATGCCGGAGAATACAGACTCCATCGATTATGTCATGGAGAAAGCGTCTGGAGCTCACTTCTCCGGCCTACGCTTCGATGGCATCCTCT CTTCTCCTCCTGCTTCCTCCACCTCATCTCCTGCTCATCGTTCTTCATCTACAGCCGTCGGTTCTGTTTTCCCCGCCGATGCCAATGTCCCCAAGCAGCC TTTTGTCATCGGGGTTTCTGGAGGCACGGCTTCAGGGAAAACCACTGTGTGTGACATGATCATTCAGCAGCTCCATGATCACCGTGTTGTGCTTGTCAAT CAGGATTCATTCTATCGTGGGTTGACGCCTGAAGAACTAGAACGTGTTCATGAGTATAACTTCGATCATCCAGATGCTTTTGACACCGACCAGCTTTTGG ACTGCGCTGAAACGCTTAGAAGTGGGCGCCCGTATCAAGTTCCTATATATGACTTCAAGACTCATCAGCGTTGTTCAGATACCTTTAGACAGGTGAATGC CTCTGATGTAATAATCCTGGAAGGCATATTGGTTTTCCATGATCAACGTGTCCGCAACCTCATGAATATGAAGATCTTTGTTGATGCAGATGCCGATGTG AGGCTTGCTCGTAGAATACGACGTGATACGGTGGAGAGGGGTAGAGATATAGACTCTGTTCTTGAGCAGTATGCAAAATTTGTGAAGCCTGCTTTTGATG ATTTTGTCCTTCCTTCAAAGAAGTACGCCGATGTTATCATACCTCGTGGAGGTGATAACCATGTCGCCATTGATTTGATTGTGCAACATCTCCAAACAAA GCTTGGTCTACACGACCTCTGCAAAATATATCCGAATGTGTATGTTATTCAATCAACTTTTCAGATTAGAGGCATGCATACCTTGATTCGAGACAGGGAA ATATCAAAGCATGATTTCATCTTTTATTCGGATCGCCTTATTCGGCTGGTTGTGGAACATGGCCTTGGCCATTTGCCATTCACGGAAAAGCAAGTTGTTA CCCCAACCAGGTCAGTATATACTGGGGTTGACTTCTGCAAGAAATTATGTGGAGTATCTATTATTCGAAGTGGAGAAAGTATGGAAAATGCGTTGCGTGC ATGCTGCAAAGGAATCAAAATTGGCAAAATTCTGATCCACCGGGATGGAGACAACGGAAAACAGCTCATTTATGAGAAACTTCCGATGGACATTTCGGAG AGGCACGTCCTCCTTCTAGACCCTGTTCTGGCAACTGGTAACTCAGCCAACCAAGCAATAGATCTACTAATACAGAAAGGAGTTCCAGAATCCCACATTA TATTCTTGAACCTAATCTCTGCTCCTGAAGGGATCCATTGCGTCTGCAAAAGGTTTCCGTCTCTGAAGATAGTGACGTCGGAGATAGACATTGCGATCAA CGATGAATTCAGGGTGGTGCCCGGGTTGGGAGAGTTTGGTGATCGCTACTTTGGAACCGATGATTAA
AA sequence Show only first row Show all	>Lus10041569 pacid=23146615 polypeptide=Lus10041569 locus=Lus10041569.g ID=Lus10041569.BGIv1.0 annot-version=v1.0 MPVKMPENTDSIDYVMEKASGAHFSGLRFDGILSSPPASSTSSPAHRSSSTAVGSVFPADANVPKQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVN QDSFYRGLTPEELERVHEYNFDHPDAFDTDQLLDCAETLRSGRPYQVPIYDFKTHQRCSDTFRQVNASDVIILEGILVFHDQRVRNLMNMKIFVDADADV RLARRIRRDTVERGRDIDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHLQTKLGLHDLCKIYPNVYVIQSTFQIRGMHTLIRDRE ISKHDFIFYSDRLIRLVVEHGLGHLPFTEKQVVTPTRSVYTGVDFCKKLCGVSIIRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPMDISE RHVLLLDPVLATGNSANQAIDLLIQKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDIAINDEFRVVPGLGEFGDRYFGTDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40870		UKL1, ATUK/UPRT...	URIDINE KINASE-LIKE 1, uridine...		Lus10041569 [exp]	0	1
AT3G09850			D111/G-patch domain-containing...		Lus10036327 [exp]	1.0	0.8829
AT5G40440		ATMKK3	mitogen-activated protein kina...		Lus10001137 [exp]	5.3	0.8391
AT1G60995			unknown protein		Lus10033791 [exp]	13.6	0.8474
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Lus10035175 [exp]	13.6	0.8458
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10025789 [exp]	14.4	0.8335
AT2G23790			Protein of unknown function (D...		Lus10019663 [exp]	22.2	0.8366
AT4G21470		ATFMN/FHY	riboflavin kinase/FMN hydrolas...		Lus10018906 [exp]	29.2	0.8279
AT1G70160			unknown protein		Lus10029209 [exp]	29.6	0.8378
AT3G04530		ATPPCK2, PEPCK2...	phosphoenolpyruvate carboxylas...		Lus10021190 [exp]	31.5	0.7995
AT5G53350		CLPX	CLP protease regulatory subuni...		Lus10036701 [exp]	34.2	0.8343

Compare expression of checked genes

Lus10041569 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.