Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14180 523 / 0 MPL1 Myzus persicae-induced lipase 1 (.1) AT2G15230 280 / 2e-90 ATLIP1 lipase 1 (.1) AT1G73920 92 / 9e-20 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G18460 86 / 2e-17 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022349 [exp] 810 / 0 AT5G14180 527 / 0.0 Myzus persicae-induced lipase 1 (.1) Lus10015159 [exp] 420 / 7e-145 AT5G14180 409 / 2e-141 Myzus persicae-induced lipase 1 (.1) Lus10031523 [exp] 416 / 3e-143 AT5G14180 410 / 1e-141 Myzus persicae-induced lipase 1 (.1) Lus10038401 [exp] 373 / 2e-126 AT5G14180 383 / 4e-131 Myzus persicae-induced lipase 1 (.1) Lus10023171 [exp] 370 / 4e-125 AT5G14180 358 / 3e-121 Myzus persicae-induced lipase 1 (.1) Lus10038378 [exp] 368 / 4e-125 AT5G14180 377 / 2e-129 Myzus persicae-induced lipase 1 (.1) Lus10015158 [exp] 361 / 1e-121 AT5G14180 351 / 2e-118 Myzus persicae-induced lipase 1 (.1) Lus10031524 [exp] 356 / 2e-119 AT5G14180 359 / 2e-121 Myzus persicae-induced lipase 1 (.1) Lus10002808 [exp] 297 / 4e-95 AT2G15230 551 / 0.0 lipase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G332300 [exp] 601 / 0 AT5G14180 533 / 0.0 Myzus persicae-induced lipase 1 (.1) Potri.014G159800 [exp] 427 / 1e-147 AT5G14180 422 / 3e-146 Myzus persicae-induced lipase 1 (.1) Potri.014G159700 [exp] 426 / 6e-147 AT5G14180 441 / 5e-154 Myzus persicae-induced lipase 1 (.1) Potri.014G159900 [exp] 424 / 2e-146 AT5G14180 421 / 9e-146 Myzus persicae-induced lipase 1 (.1) Potri.017G069700 [exp] 391 / 5e-134 AT5G14180 374 / 4e-128 Myzus persicae-induced lipase 1 (.1) Potri.009G094900 [exp] 287 / 5e-93 AT2G15230 564 / 0.0 lipase 1 (.1) Potri.012G060600 [exp] 81 / 4e-16 AT1G73920 917 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold CL0028 [flax] [poplar] AB_hydrolase PF04083 [flax] [poplar] Abhydro_lipase Partial alpha/beta-hydrolase lipase region
Representative CDS sequence Show only first row Show all	>Lus10041571 pacid=23146962 polypeptide=Lus10041571 locus=Lus10041571.g ID=Lus10041571.BGIv1.0 annot-version=v1.0 ATGACTAGTCATGGCTTCAACAAGTTGCTTAAAATAAGCTTCAATGTGTTGGTTATAGCCTTGATGGTCATGAGTGATCATGGATCCTCAAGTTTTCTTG GGAGGAAGAGAGGAGGCAGTAGCAGCAGCAGTAGCAGCAGCAGCAGCAGCAGCAGTGTTGTGATTGACCCAACACCAATTGGGATATGTGCTTCTTCAGT CATAGTTCATGGCTATAAATGCCAGGAGATTGATGTGACAACAAAAGATGGGTTCATACTGAATATGCAGAGAATACCAGAAGGCATAAGTGGAGGTGAT GGAAGTAGGAGGCAGCCTGTTTTGATTCAGCATGGAATTCTTGTGGATGGCATGACATGGCTTCTGAATTCACCAGAACAGAACTTACCTATGATCTTAG CTGATAAGGGTTTTGATGTTTGGATTGCTAACACTAGAGGGACCAGGTTCAGCAGAAGGCACACCTCTCTCCAGCCCAACCAACAGGAATTCTGGAATTG GTCATGGGATGAACTGGTGGTGTATGATCTCCCGGCTGTTGTTGACCATGTCTACAAAGAAACCGGTCAAAAGATGCACTACGTCGGCCATTCTCTGGGG ACTTTGATAGGATTGGCATCTTTCTCGGAAGGGCTACTGGTGGACCGGCTGAAATCAGCTGCATTTCTAAGCCCCATTGCCTACTTGAGCCATATGAACA CCGTCCTTGGTGCTCTTGCTGCCAGAGCTTTTGTTGGTGAGATAACTACTATGCTTGGTGTTGCTGAGTTCAATCCGAAAGGGAAGCAAGTTTCTGACTT TCTGAGTGCCCTTTGTGCCTATCCTGGACTTGACTGCTATGACCTAATGACTGCCATCACTGGCAAGAATTGCTGCCTGAATTCTTCAACAATGGCTGTT GTCCTTAAGAATGAGCCTCAATCAACATCCACCAAGAACTTGGTCCATTTGGCTCAAACTGTCAGGGATGGTGTAATAGCCAAATTCAACTATGGGAAAG CTTACTACAACATTATGCACTATGGAGAATCCAGGCCACCAGTGTACAATCTTTCAAACATCCCTCGTGACCTTCCGATTTCTCTCAGCTATGGAGGCCA GGACGCGCTCTCAGACACCCGGGATGTGGAGCACTTGCTTGACAACTTCAGGTCTCATGACGTAGACAAGCTTACAGTTCAGTATGTGAAGGAGTATGCT CATGCGGATTTCATAATGGGGGTCAATGCCAAAGACATACAGCCAGATTACAAGGACAATGAAGTCATTTTGCAGGATGGTTATGAAGTTGCTGTAATGC TGTTCTCAAGTTTGACAGACATTAGTGAGGTAGTCAATCATCACCCTTGGCTGTATAATGAGTCCAGTTATAAGAAGGGAAGAAGTAGGGAGTGA
AA sequence Show only first row Show all	>Lus10041571 pacid=23146962 polypeptide=Lus10041571 locus=Lus10041571.g ID=Lus10041571.BGIv1.0 annot-version=v1.0 MTSHGFNKLLKISFNVLVIALMVMSDHGSSSFLGRKRGGSSSSSSSSSSSSSVVIDPTPIGICASSVIVHGYKCQEIDVTTKDGFILNMQRIPEGISGGD GSRRQPVLIQHGILVDGMTWLLNSPEQNLPMILADKGFDVWIANTRGTRFSRRHTSLQPNQQEFWNWSWDELVVYDLPAVVDHVYKETGQKMHYVGHSLG TLIGLASFSEGLLVDRLKSAAFLSPIAYLSHMNTVLGALAARAFVGEITTMLGVAEFNPKGKQVSDFLSALCAYPGLDCYDLMTAITGKNCCLNSSTMAV VLKNEPQSTSTKNLVHLAQTVRDGVIAKFNYGKAYYNIMHYGESRPPVYNLSNIPRDLPISLSYGGQDALSDTRDVEHLLDNFRSHDVDKLTVQYVKEYA HADFIMGVNAKDIQPDYKDNEVILQDGYEVAVMLFSSLTDISEVVNHHPWLYNESSYKKGRSRE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10041571 [exp]	0	1
AT3G01750			Ankyrin repeat family protein ...		Lus10022330 [exp]	1.4	0.8636
AT1G33470			RNA-binding (RRM/RBD/RNP motif...		Lus10013781 [exp]	2.4	0.8288
AT2G17550			unknown protein		Lus10016693 [exp]	3.9	0.8187
AT5G63640			ENTH/VHS/GAT family protein (....		Lus10012506 [exp]	6.3	0.8099
AT1G78110			unknown protein		Lus10027930 [exp]	12.0	0.7219
AT1G04360			RING/U-box superfamily protein...		Lus10024881 [exp]	13.4	0.7179
AT1G72880			Survival protein SurE-like pho...		Lus10008390 [exp]	14.5	0.7823
AT1G33470			RNA-binding (RRM/RBD/RNP motif...		Lus10039151 [exp]	15.3	0.7905
AT1G64690		BLT	BRANCHLESS TRICHOMES, branchle...		Lus10017339 [exp]	16.1	0.7481
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10023910 [exp]	16.5	0.7405

Compare expression of checked genes

Lus10041571 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.