Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27210 77 / 1e-16 unknown protein AT3G01860 76 / 2e-16 unknown protein AT5G40860 69 / 6e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022348 [exp] 281 / 3e-96 ND / Lus10035217 [exp] 144 / 9e-43 AT3G27210 79 / 3e-18 unknown protein Lus10032051 [exp] 145 / 5e-40 AT5G40870 698 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10011366 [exp] 46 / 9e-06 AT3G27210 39 / 0.001 unknown protein Lus10034680 [exp] 45 / 1e-05 AT3G27210 42 / 1e-04 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G332500 [exp] 252 / 7e-85 AT3G01860 96 / 3e-24 unknown protein Potri.010G058700 [exp] 108 / 9e-29 AT3G01860 83 / 4e-19 unknown protein Potri.008G176300 [exp] 107 / 5e-28 AT3G01860 67 / 2e-13 unknown protein Potri.012G096050 [exp] 51 / 3e-07 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041572 pacid=23146634 polypeptide=Lus10041572 locus=Lus10041572.g ID=Lus10041572.BGIv1.0 annot-version=v1.0 ATGGGGTCATGTGTATCATCATCGCTTCACAAGGGGTCCGCCATGAAAATGGGAGTGTCGTTTGGTTCCAAACCAGACGAGCTCGTGCTCCCTGAATCCC CTGTCAAGGATAAGCACGTCACTTCTACCGCTGCTCCCCTCGACCTTCCAATCAACCGCTTCCACAGCTATGGCAGCAAAGAGGAATCCTTTTTCGATTC CCAGCCCTGGTTAGAATCTGATAGCGAAGATGATTTTCACAGTGTCAGGGGCGATTTCACCCCGTCTCGTGGTAGTACCCCAGTTCATCACAGCTTCTTG GTCGGGACCCCCCAGCTTAACAAAACCGTGGTGGAGGCAATACCTCCTACTCCATATTCATTGCCTGAGATATCTCCTTCTGGGAAGAAGAGACTTTCCG ACCTTTTCAAAGACAGCATGAGGGAAAACCGCAATGCTGGAGAGGACACCACACAACCTTCTTCAGAGAGCCATATGATGAATGGAAATGGGACACCGAC AGAGGTGAAACAAAAGATGAGTGATTTCCTTCCAAAGTCTGGTGAGGGCACACCATATGTTTCAGGTGTCAACTCTGTGTGTAGCAGCGAAAGGACTGCC AATGGTGAAGCTCTTGTGAATGAGAAATCATTCAAATCCATGCAGTGCTGCCTTCCGAGCATGATTTCTCGACGTAGTTTTAGTGATCGCAAGAAGAGGA TGAGCCCAGCACCCATCACTGCATAA
AA sequence Show only first row Show all	>Lus10041572 pacid=23146634 polypeptide=Lus10041572 locus=Lus10041572.g ID=Lus10041572.BGIv1.0 annot-version=v1.0 MGSCVSSSLHKGSAMKMGVSFGSKPDELVLPESPVKDKHVTSTAAPLDLPINRFHSYGSKEESFFDSQPWLESDSEDDFHSVRGDFTPSRGSTPVHHSFL VGTPQLNKTVVEAIPPTPYSLPEISPSGKKRLSDLFKDSMRENRNAGEDTTQPSSESHMMNGNGTPTEVKQKMSDFLPKSGEGTPYVSGVNSVCSSERTA NGEALVNEKSFKSMQCCLPSMISRRSFSDRKKRMSPAPITA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01860			unknown protein		Lus10041572 [exp]	0	1
AT1G15960		ATNRAMP6, NRAMP...	NRAMP metal ion transporter 6 ...		Lus10024069 [exp]	2.6	0.8843
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10015287 [exp]	6.0	0.8718
AT4G21210		ATRP1	PPDK regulatory protein (.1.2)		Lus10006758 [exp]	6.6	0.8521
AT1G52800			2-oxoglutarate (2OG) and Fe(II...		Lus10021025 [exp]	7.2	0.8078
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10021270 [exp]	8.9	0.8634
AT5G20700			Protein of unknown function (D...		Lus10027595 [exp]	9.9	0.8668
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10036709 [exp]	10.1	0.8708
AT2G25625			unknown protein		Lus10013129 [exp]	12.8	0.8686
AT4G10960		UGE5	UDP-D-glucose/UDP-D-galactose ...		Lus10001822 [exp]	15.8	0.8565
AT5G61340			unknown protein		Lus10003483 [exp]	15.9	0.8293

Compare expression of checked genes

Lus10041572 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.