Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28740 1355 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G45990 71 / 2e-12 crooked neck protein, putative / cell cycle protein, putative (.1) AT5G41770 66 / 1e-10 crooked neck protein, putative / cell cycle protein, putative (.1) AT3G51110 62 / 7e-10 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13210 51 / 4e-06 crooked neck protein, putative / cell cycle protein, putative (.1) AT2G36730 47 / 4e-05 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G03430 45 / 0.0003 EMB2770, STA1 STABILIZED 1, EMBRYO DEFECTIVE 2770, pre-mRNA splicing factor-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022346 [exp] 1155 / 0 AT5G28740 905 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022347 [exp] 367 / 1e-121 AT5G28740 301 / 3e-97 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013624 [exp] 291 / 9e-92 AT5G28740 318 / 9e-103 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003866 [exp] 160 / 5e-45 AT5G28740 149 / 6e-42 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003867 [exp] 107 / 7e-28 AT5G28740 76 / 5e-18 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034294 [exp] 70 / 5e-12 AT5G41770 1153 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Lus10041477 [exp] 66 / 8e-11 AT5G41770 1161 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Lus10039811 [exp] 56 / 2e-07 AT4G03430 1560 / 0.0 STABILIZED 1, EMBRYO DEFECTIVE 2770, pre-mRNA splicing factor-related (.1) Lus10018580 [exp] 55 / 3e-07 AT4G03430 1566 / 0.0 STABILIZED 1, EMBRYO DEFECTIVE 2770, pre-mRNA splicing factor-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G035600 [exp] 1534 / 0 AT5G28740 1418 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G043812 [exp] 251 / 2e-77 AT5G28740 236 / 2e-72 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G094400 [exp] 67 / 3e-11 AT5G41770 1117 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Potri.003G137200 [exp] 67 / 6e-11 AT5G41770 1150 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Potri.013G135300 [exp] 54 / 4e-07 AT4G03430 1470 / 0.0 STABILIZED 1, EMBRYO DEFECTIVE 2770, pre-mRNA splicing factor-related (.1) Potri.016G062600 [exp] 47 / 8e-05 AT3G11964 2209 / 0.0 RNA binding;RNA binding (.1) Potri.010G145000 [exp] 45 / 0.0002 AT3G17040 797 / 0.0 high chlorophyll fluorescent 107 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041573 pacid=23146695 polypeptide=Lus10041573 locus=Lus10041573.g ID=Lus10041573.BGIv1.0 annot-version=v1.0 ATGTCAATATCGAAAGACCTATATCCATCTCAGGATGATCTGCCTTACGAGGAGGAGTTATTGCGTAATCCCTTTAGCCTCAAGCTTTGGTGGCGCTACT TAGTAGCCCGTCGAGATGCCGCTTTCAAGAAGAGGTTCGTTATATACGAGCGGGCACTCAAGGCATTGCCCGGAAGTTACAAGCTCTGGCACGCATATCT TACGGAACGCCTGGATGTTGTGAGGAATCTTCCAACTACTCACTCTCAGTATGATGCTCTTAACAATACATTTGAGAGGGCTTTGGTTACTATGCACAAG ATGCCTCGTATCTGGATAATGTACTTGCAGAGCTTGACTTCCCAAAAATTGATCAACCGGACTCGCAGAGCTGCTGATAGAGCTCTTTGTGCCTTGCCTG TCACGCAGCATGATAGGATATGGGAGCTGTACTTGAAATTTGTTAGCCAGGATGGGATCCCAATTGAGACTTCCTTGAGAGTGTACCGGAGGTATCTTAA GTATGACCCTGGTCATATTGAGGATTTCATTGAGTTCCTATTGAATTCACGCATTTGGCAAGAGGCATCTGAGAGGCTGGCTTCAGTTTTGAATGATGAC CAGTTTTACTCCTTGAAAGGGAAGACGAAGCATACTTTGTGGCTTGAATTGTGCGACTTGCTCACCCGACATGCCAAAGAGGTTTCTGGGCTCAATGTTG ATGCAATTATCAGAGGTGGTATTCGGAAGTATACAAATGAAGTTGGCCGATTGTGGACTTCTCTAGCTGATTATTATATTAGAAGGGGTTTGTTTGACAA GACGAGGGACATTTTTGAGGAAGGTATGACCACTGTGATTACTGTCAGGGATTTCAGTGTTATTTTCGATGCATATGGTGAGTTTGAACAAGGCATGACA AGTCATAAGATCGAGAATATGGGGTCTAGTGACGAGGAAAAAGTAGCAGATGGTCCAGAGCAGAATGGCTTGGAAGTGGCCATTCGGTTAGATGTCAATT CAAAGTTTAAGAAGAAGTTACTCTCTGGATTTTGGTTAAATGATGATAAGGATGTGGATTTGATGCTAGCTCGACTTGACTATCTGACGGAAAGAAGGCC TGAGTTGGCTAATAGTGTCCTCTTGAGGCAAAATCCCCACAATGTGGAACAATGGCATCGTAGGGTGAAGCTATTTGAGGGCAATCCCCACAAGCAGATA TTGACGTATACCGAGGCTGTGAGAACGGTTGATCCAATGAAAGCAGTTGGAAAGCCTCACACTCTTTGGGTTGCTTTTGCCAAGCTGTATGAGAAACATA ACGATCTTGTCAATGCAAGGGTGATTTTTGACAAGGCTGTGCAAGTAAATTATAAGACTGTTGATAATTTGGCTAGTGTTTGGTGCGAGTGGGCAGAGAT GGAAATCAGGCACAAGAATTTCAAACCTGCTCTGGAGCTTTTAAGGAGGGCAACAGCAGAACCATCAGTTGAGGTCAAACGAAGGGTGGCTGCTGATGGA AACGAACCAGTGCAGATAAAGCTGCACAAGTCGTTGAGACTCTGGGCTCTTTATGTTGATCTGGAGGAGGGTCTAGGAACTTTAGAGTCTACTCGTGCTG TTTATGAGCGAATATTGGACCTGAGAATAGCTACTCCGCAGATTATTATCAATTATGCATGGCTTCTGGAGGAAAATAAGTACTTCGAAGATGCATTCAA GGTTTACGAGAGAGGGGTCAAAATATTCAAGTATCCTCACGTGAAAGACATATGGGTAACTTATTTATCAAAGTTTGTAAAGAGATATGGCAAGACAAAG CTGGAACGGTCTAGAGAATTGTTTGACCATGCTATTGAAATGACTCCTGCGGACTCTGTGAAACCTTTGTATCTTCAGTATGCCAAGCTTGAAGAGGATT ATGGCTTGGCCAAGCGAGCTATGAAAGTATATGATCAAGCCACCAAGGCTGTTCCCAGCAATGAGAAATTGGGCATGTATGAAATTTATATTGCCCGTGC TTCCGACATATTTGGGGTTCCCCAAACAAGAGAGATTTATGAACAGGCAATAGACTCTGGTCTCCCGGAAAAAGATGTGAAGACAATGTGTATCAGATAT GCAGAGTTGGAGAAGAACTTAGGAGAAATAGACCGGGCACGAGGAATATATGGATATGCCTCTCAGTTTGCTGATCCAAGATCTGATCAAGTTTTCTGGA GCAAGTGGCATGACTTTGAGGTTCTTCATGGAAATGAAGATACCTTCCGGGAAATGCTGCGAGTTAAACGAACTGTTACGGCCAGTTTTAGTCAGACACA CTTTATTTTGCCAGAGTATATGATGCAGAAGGATCAAAGGATGAGTATCGATGATGCCAAAGATAAGTTGAAACAAGCTGGGCTCCCTGAGGACGAAATG GCTGCTCTTGAAAAGCAGCTAGCACCACCAGTTACAACTAATGACAATGCCGGAAAAGACGGCAACAGAACAGTTGGATTCGTGAGCGCAGGAGTACATA TGCAGACTGATGGAGGGCTAAAGCTTAACACGAATCTGGAAGACATCGAGCTCCCCGAAGAAAGTGACTCGGAGGATGACGATGATAAAGTTGAAATCGC GCAGAAAGAGGTTCCCGAGGAGGTGTTTGGGGGATTGGTGAGGAAGAGAGACGAGGCAGGGAAAGACGGCGATGGTGGTGCAGCAAAGGACAAGGATGAT GGCGAAAGCCGGCTCGGGGCTCTCGAGAGAATAAAAAGACTAAAACGAGGGTGA
AA sequence Show only first row Show all	>Lus10041573 pacid=23146695 polypeptide=Lus10041573 locus=Lus10041573.g ID=Lus10041573.BGIv1.0 annot-version=v1.0 MSISKDLYPSQDDLPYEEELLRNPFSLKLWWRYLVARRDAAFKKRFVIYERALKALPGSYKLWHAYLTERLDVVRNLPTTHSQYDALNNTFERALVTMHK MPRIWIMYLQSLTSQKLINRTRRAADRALCALPVTQHDRIWELYLKFVSQDGIPIETSLRVYRRYLKYDPGHIEDFIEFLLNSRIWQEASERLASVLNDD QFYSLKGKTKHTLWLELCDLLTRHAKEVSGLNVDAIIRGGIRKYTNEVGRLWTSLADYYIRRGLFDKTRDIFEEGMTTVITVRDFSVIFDAYGEFEQGMT SHKIENMGSSDEEKVADGPEQNGLEVAIRLDVNSKFKKKLLSGFWLNDDKDVDLMLARLDYLTERRPELANSVLLRQNPHNVEQWHRRVKLFEGNPHKQI LTYTEAVRTVDPMKAVGKPHTLWVAFAKLYEKHNDLVNARVIFDKAVQVNYKTVDNLASVWCEWAEMEIRHKNFKPALELLRRATAEPSVEVKRRVAADG NEPVQIKLHKSLRLWALYVDLEEGLGTLESTRAVYERILDLRIATPQIIINYAWLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTK LERSRELFDHAIEMTPADSVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPSNEKLGMYEIYIARASDIFGVPQTREIYEQAIDSGLPEKDVKTMCIRY AELEKNLGEIDRARGIYGYASQFADPRSDQVFWSKWHDFEVLHGNEDTFREMLRVKRTVTASFSQTHFILPEYMMQKDQRMSIDDAKDKLKQAGLPEDEM AALEKQLAPPVTTNDNAGKDGNRTVGFVSAGVHMQTDGGLKLNTNLEDIELPEESDSEDDDDKVEIAQKEVPEEVFGGLVRKRDEAGKDGDGGAAKDKDD GESRLGALERIKRLKRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10041573 [exp]	0	1
AT4G20980			Eukaryotic translation initiat...		Lus10011171 [exp]	1.7	0.9350
AT3G08900		RGP3	reversibly glycosylated polype...		Lus10004640 [exp]	4.2	0.9021
AT3G09630			Ribosomal protein L4/L1 family...		Lus10014014 [exp]	4.2	0.9159
AT4G20980			Eukaryotic translation initiat...		Lus10015435 [exp]	4.9	0.9108
AT5G66560			Phototropic-responsive NPH3 fa...		Lus10037432 [exp]	5.3	0.8819
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10013991 [exp]	5.7	0.9024
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10022445 [exp]	5.8	0.8918
AT4G27585			SPFH/Band 7/PHB domain-contain...		Lus10032909 [exp]	6.0	0.8968
AT3G03060			P-loop containing nucleoside t...		Lus10031211 [exp]	7.3	0.9114
AT5G64950			Mitochondrial transcription te...		Lus10004329 [exp]	7.5	0.8941

Compare expression of checked genes

Lus10041573 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.