Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01840 345 / 3e-110 Protein kinase superfamily protein (.1) AT2G33580 198 / 7e-55 Protein kinase superfamily protein (.1) AT1G24030 150 / 4e-40 Protein kinase superfamily protein (.1.2) AT3G21630 154 / 7e-40 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT4G02010 154 / 2e-39 Protein kinase superfamily protein (.1) AT5G49760 152 / 2e-38 Leucine-rich repeat protein kinase family protein (.1) AT3G58690 146 / 2e-38 Protein kinase superfamily protein (.1) AT3G23750 150 / 7e-38 Leucine-rich repeat protein kinase family protein (.1) AT1G21590 147 / 5e-37 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G51940 146 / 8e-37 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022345 [exp] 1013 / 0 AT3G01840 429 / 1e-141 Protein kinase superfamily protein (.1) Lus10008586 [exp] 185 / 5e-50 AT2G33580 594 / 0.0 Protein kinase superfamily protein (.1) Lus10016794 [exp] 174 / 5e-49 AT2G23770 219 / 2e-66 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10019661 [exp] 178 / 6e-48 AT2G23770 483 / 8e-164 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10000577 [exp] 176 / 3e-47 AT2G23770 490 / 1e-166 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10019662 [exp] 167 / 8e-46 AT2G33580 198 / 3e-57 Protein kinase superfamily protein (.1) Lus10030022 [exp] 170 / 2e-45 AT3G21630 692 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10021889 [exp] 169 / 3e-45 AT2G23770 256 / 2e-77 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10039406 [exp] 167 / 3e-45 AT2G33580 229 / 4e-68 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G332800 [exp] 501 / 3e-170 AT3G01840 471 / 4e-158 Protein kinase superfamily protein (.1) Potri.005G259600 [exp] 198 / 6e-55 AT2G33580 637 / 0.0 Protein kinase superfamily protein (.1) Potri.005G128200 [exp] 183 / 8e-50 AT2G23770 514 / 4e-176 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G128401 [exp] 174 / 1e-49 AT2G33580 196 / 1e-57 Protein kinase superfamily protein (.1) Potri.008G160600 [exp] 180 / 8e-49 AT2G33580 217 / 8e-62 Protein kinase superfamily protein (.1) Potri.014G040000 [exp] 179 / 2e-48 AT2G23770 345 / 1e-110 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.010G078700 [exp] 176 / 2e-47 AT2G23770 288 / 5e-89 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.007G032100 [exp] 176 / 4e-47 AT2G23770 513 / 6e-175 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.014G156400 [exp] 173 / 2e-46 AT3G21630 678 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.005G128300 [exp] 169 / 9e-45 AT2G23770 394 / 2e-129 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10041574 pacid=23147045 polypeptide=Lus10041574 locus=Lus10041574.g ID=Lus10041574.BGIv1.0 annot-version=v1.0 ATGGGCACGGCAGCTCTTCTTTTGTCTTCTTCCCTTGTCATCATAATATTAACATCTACAGCCCCTTCTATCTTAGCACACAACAACAACTTGTTCAGCT GCTATTCATCAATTCCTCCTACTACAGGTTTCAACACCTGCAATTCCCCTACTTCCACTTGCAACACATTTGCTCTTGTTCACACCAATCCTCCATACTT CTCTTCCCTCTCAAACCTAGCATCTTACCTCAATCTCGACCGTCTATCCATTGCTCAAGCCAATGGCCTCCCTCCCAAAACCGATTCCCTCCCCATTGAT CATCAACCTTTACTGATTCCCTTGACCTGCAAATGTAACAGTGGGGTTTTCGCTGCTCAACTTGTGGTCAAGACTGACGTTAAAGCTAGAATCTTTCTCA CATACCCTGTGATTCAAGGAGATTCGCTATCTACCCTTTCAATCAGATTCAACGTTTCACCGGAATCCATCGTTTCGGCGAACACCCACCCGTTCAATAT CCAGCCTTTCACCTCTCTTTTCATCCCACTCAACGCCACCAAGCCTCCACCTTTGATCTTAATACGGCATCGTTTCCGGCACCCGGAGATGCGGCGGAAA GTTGGTATCTACATTGCTGTTATCTGCGGGGTTATCGTGGGAAGCATTGCTATAGCGGCGGCTTTCTTCCTTGCGATAATGCTGCTTAAGAAGAACAAGA ATAAGAAGACGAAACTAACCCCTCAGAAACAGAGGAAGAAACAGAGCATTTCCAACAAAGATGCTGACTTGGAACTCCAGCAGCTCAGCTTGAGCGTCAG AACCACCAGCGACAAGAAAGTATCGTTCGAGAGTTCGCAGCAGGACAGCCTTGATGTTCCGGCTACGACACCTCGAAAGGGGATGGTGATTCTGGAGAGC TACACGGTGGAGGAGCTGACAAGGGCTACAGAAGATTTCAGTTCAAGTAATCTGATTGAAGGAAATGTATATCACGGCCGGCTCAACGGGAAGAACATGG CAATCAAGAGATTGAACAAGACGGATTTGGTGTTGAAGATCGATTTCGGGATCTTGAGCATTCCAACACACCACCATCATCCTAAGATCCTCAGGCTTCT AGGTACTTGTCTGAATGAAGGAGAGTCTGAAAAGGTTCCATCATATTTGGTGTTTGAGTATGCGAAAAACGGGTCCTTGAGGGATTGGCTACTCGGTGGA TTGGCGATGAAGAACCAATTCATCGCTTCGTGTTACTGTTTCTTGACATGGAATCAGAGGCTCAAGATATGCCTTGATGTGGCAGTGGGGTTGCAGTATA TGCACCTTATCATGAGTCCGAGCTATGTCCATAAGAATCTGAGGACCAGGAACATCTTCTTGGATGAAGAGTTCAATGCTAAGATCGGGAACTTCGCAAT GGCGAAATTGGTCGAAGATGATGATTGTAATGACAAATCGAAAGACACAGGCTATCTAGCTCCCGAGTATGTGAAAAATGCCACAGTGTCTCCAAGTGTG GACATATATGCCTACGGTGTCGTTCTGCTGGAGGTTTTGTCAGGCAAAACTGCAGCAACTGATAGTGGGAATGCGAAGAAGCTTTGTGAGAATATGAAGG GGATGTTGGCATCCGAGGAGGAGCTCAAGGATTGGATGGATAGTGCATTAGGTGATAACTATTCGTTGGATGGAGCAGTGGCATTGGCCAATCTGGCGTG TACATGTGTCGAGGAAGAGCCCAGTTCGAGGCCAAGTGCTGGGGATATAGCGGAGAAGCTGTCTAAATTGGTGGAGGAATTAAGTGTTATGGGACAAGGA GGAGCAGAGAGTAATAATTTGTCTTTGTGTGAGAGTTCTTGTAAGCCTCTGGTGAAAAACGCTGCAGAAAGTATAAGGTGA
AA sequence Show only first row Show all	>Lus10041574 pacid=23147045 polypeptide=Lus10041574 locus=Lus10041574.g ID=Lus10041574.BGIv1.0 annot-version=v1.0 MGTAALLLSSSLVIIILTSTAPSILAHNNNLFSCYSSIPPTTGFNTCNSPTSTCNTFALVHTNPPYFSSLSNLASYLNLDRLSIAQANGLPPKTDSLPID HQPLLIPLTCKCNSGVFAAQLVVKTDVKARIFLTYPVIQGDSLSTLSIRFNVSPESIVSANTHPFNIQPFTSLFIPLNATKPPPLILIRHRFRHPEMRRK VGIYIAVICGVIVGSIAIAAAFFLAIMLLKKNKNKKTKLTPQKQRKKQSISNKDADLELQQLSLSVRTTSDKKVSFESSQQDSLDVPATTPRKGMVILES YTVEELTRATEDFSSSNLIEGNVYHGRLNGKNMAIKRLNKTDLVLKIDFGILSIPTHHHHPKILRLLGTCLNEGESEKVPSYLVFEYAKNGSLRDWLLGG LAMKNQFIASCYCFLTWNQRLKICLDVAVGLQYMHLIMSPSYVHKNLRTRNIFLDEEFNAKIGNFAMAKLVEDDDCNDKSKDTGYLAPEYVKNATVSPSV DIYAYGVVLLEVLSGKTAATDSGNAKKLCENMKGMLASEEELKDWMDSALGDNYSLDGAVALANLACTCVEEEPSSRPSAGDIAEKLSKLVEELSVMGQG GAESNNLSLCESSCKPLVKNAAESIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01840			Protein kinase superfamily pro...		Lus10041574 [exp]	0	1
AT1G23170			Protein of unknown function DU...		Lus10021774 [exp]	2.8	0.9574
AT3G61920			unknown protein		Lus10023060 [exp]	4.0	0.9659
AT5G62280			Protein of unknown function (D...		Lus10027191 [exp]	5.7	0.9664
AT2G14820		MEL3, NPY2	NAKED PINS IN YUC MUTANTS 2, M...		Lus10033796 [exp]	6.0	0.9528
AT2G01830		CRE1, AHK4, WOL...	WOODEN LEG 1, WOODEN LEG, CYTO...		Lus10028992 [exp]	8.8	0.9632
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Lus10011052 [exp]	9.7	0.9603
AT2G35040			AICARFT/IMPCHase bienzyme fami...		Lus10013871 [exp]	11.0	0.9541
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10019905 [exp]	12.1	0.9399
AT1G65900			unknown protein		Lus10007381 [exp]	12.7	0.9493
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10001429 [exp]	13.1	0.9603

Compare expression of checked genes

Lus10041574 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.