Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34090 427 / 2e-150 unknown protein AT2G23370 415 / 1e-145 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004995 [exp] 315 / 4e-107 AT4G34090 206 / 3e-65 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G045900 [exp] 497 / 4e-178 AT4G34090 405 / 5e-142 unknown protein Potri.009G099600 [exp] 452 / 3e-160 AT4G34090 471 / 6e-168 unknown protein Potri.001G304401 [exp] 130 / 3e-37 AT4G34090 144 / 2e-43 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041575 pacid=23146748 polypeptide=Lus10041575 locus=Lus10041575.g ID=Lus10041575.BGIv1.0 annot-version=v1.0 ATGAGGATTGGAGGAATGGTGTTTAGCGCTCCACCGACTACGTCTCTGCTCCTCGGTAACGTCTGCCGCCGCAAGCCCACGCTCCGCTTCTTTTCCGCTT CTGCTTTTCCTTCTGCGTCTCCTTCTTCGTCTCTTTTGTTTTCTGACCATATTGATTTCATCAAAGATGTGGCTGCAACTCAGCCTCCCAAGCATTTGCC TCAGTTGTTGAGAATTCTTCAGTCCAGAGGAGATTCCATTGTTTCTCCGGGGGACAAGCAAGGGATGATCCCATTAGCTATTCCACTTGCGAAAACTAGC TCAGATGCTGTAATTGCATTGCTGAGATGGCCAACAGCACCGCCTGGAATGGAAATGCCAGTAGTAGAGGTTCGGAAATACGGAGTTTGGCTTATGGCAA AGACGGTAGATCAGTTTATGCACAGAATCCTGGTTGAGGAGGATGCTAATGGCCTTTCCAAAGGTAATGATGATATATTTAATGCAGCAGCGGATGCAGG GAATATATATACCAAGGGTGACTTTGCTGATTCTCAAATATCAGACCCAGATGTTTACATACTGAAGAAGGTTGGGTTGTTTCCTGATATATTGGAGCGT AAAGTGATGCGTGATTTTGACAGAGGAGACCAGGTTTCTGCTATGGTCACTGGGGAATTCTACACAAGGAAGGAGCACTTTCCTGGGTTTGGAAGACCCT TTGTATTCAATGCCAAGATATTGCTAAAGGTAGGACGTAAGGTAGAAGCTAAAGATGCTGCCAGGGGTGCGTTAAAGTCGCCATGGTGGACACTTGGTTG CCCGTATAAGGAAGTTGCTGAGATGGCGGAATGGGAAGATGAGCAGATAGAGTATATGGAAGAAAGAGTAACAGAAGATGGAAGGAAACAAGACCTTAAC AAGGGGAAAAATCCTGCTCAGATAGCGGTGGACGAGGCAGCTTTCTTGATGGACTTGGCTTCTGTTGATGGAACTTGGGATGATTACTTGGAGCGGATTG TTGGGTGCTATACGGAGGCTGGTCTCCATGATATTGCCAAATTCTTGGAATATAGAGATTGA
AA sequence Show only first row Show all	>Lus10041575 pacid=23146748 polypeptide=Lus10041575 locus=Lus10041575.g ID=Lus10041575.BGIv1.0 annot-version=v1.0 MRIGGMVFSAPPTTSLLLGNVCRRKPTLRFFSASAFPSASPSSSLLFSDHIDFIKDVAATQPPKHLPQLLRILQSRGDSIVSPGDKQGMIPLAIPLAKTS SDAVIALLRWPTAPPGMEMPVVEVRKYGVWLMAKTVDQFMHRILVEEDANGLSKGNDDIFNAAADAGNIYTKGDFADSQISDPDVYILKKVGLFPDILER KVMRDFDRGDQVSAMVTGEFYTRKEHFPGFGRPFVFNAKILLKVGRKVEAKDAARGALKSPWWTLGCPYKEVAEMAEWEDEQIEYMEERVTEDGRKQDLN KGKNPAQIAVDEAAFLMDLASVDGTWDDYLERIVGCYTEAGLHDIAKFLEYRD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34090			unknown protein		Lus10041575 [exp]	0	1
AT3G61870			unknown protein		Lus10010112 [exp]	1.0	0.9595
AT3G02730		TRXF1, ATF1	thioredoxin F-type 1 (.1)		Lus10020199 [exp]	2.8	0.9318
AT1G66130			NAD(P)-binding Rossmann-fold s...		Lus10002180 [exp]	6.5	0.9281
AT2G03420			unknown protein		Lus10037118 [exp]	8.1	0.9207
AT2G39000			Acyl-CoA N-acyltransferases (N...		Lus10009229 [exp]	8.4	0.9080
AT3G01440		PnsL3, PQL2, PQ...	PsbQ-like 2, Photosynthetic ND...		Lus10035839 [exp]	11.1	0.9222
AT1G45230			Protein of unknown function (D...		Lus10009756 [exp]	12.2	0.9154
AT1G18730		PnsB4, NDF6	Photosynthetic NDH subcomplex...		Lus10021662 [exp]	15.0	0.9142
AT2G42190			unknown protein		Lus10031232 [exp]	17.5	0.8670
AT5G02120		PDE335, OHP	PIGMENT DEFECTIVE 335, one hel...		Lus10003965 [exp]	18.7	0.9093

Compare expression of checked genes

Lus10041575 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.