Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36910 205 / 3e-66 CBSX1, CDCP2, LEJ2 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 2, CBS domain containing protein 1, Cystathionine beta-synthase (CBS) family protein (.1) AT4G34120 182 / 5e-57 CBSX2, CDCP1, LEJ1 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004992 [exp] 211 / 4e-68 AT4G36910 248 / 1e-82 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 2, CBS domain containing protein 1, Cystathionine beta-synthase (CBS) family protein (.1) Lus10002834 [exp] 189 / 2e-59 AT4G34120 260 / 2e-87 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1) Lus10027885 [exp] 82 / 2e-18 AT4G34120 157 / 8e-47 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G140800 [exp] 218 / 5e-71 AT4G36910 300 / 6e-104 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 2, CBS domain containing protein 1, Cystathionine beta-synthase (CBS) family protein (.1) Potri.007G046400 [exp] 214 / 1e-69 AT4G36910 301 / 5e-104 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 2, CBS domain containing protein 1, Cystathionine beta-synthase (CBS) family protein (.1) Potri.001G303900 [exp] 186 / 2e-58 AT4G34120 267 / 1e-90 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1) Potri.009G099200 [exp] 178 / 9e-56 AT4G34120 266 / 1e-90 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [flax] [poplar] CBS CBS domain
Representative CDS sequence Show only first row Show all	>Lus10041576 pacid=23147081 polypeptide=Lus10041576 locus=Lus10041576.g ID=Lus10041576.BGIv1.0 annot-version=v1.0 ATGGACTCTCTTCTCCTCTCCGATTCTCCTGCCTTCATGCGCCTGCCCCCTGCCGCAACACATACAACTGCTGCTGCTACTCTCCCGAATGCTACTCCCG TCGTTTCATTCTCTCACCGGCACTTGCCTTTTCCATTTCTCTCTCGCGCCTCACCGGGACCTCTTCGTGTATCGTACCGTCGGTGCTCGTCGAATTCCAC TGTAGCGGCGAGCGGCACCTTGATGGCCTCTGCGCTTCCGAATGGTGTCTACACGGTTGGCGATTTCATGACAAAGAAAGAGGATCTATGTGTGGTGAAA CCAACAACAACTGTGGATGAAGCATTGGAGACCCTTGTGGAATGCAGAATTACTGGCTTCCCTGTGATTGATGATGACTGGAAGTTGGTACTTTACGCCG CACCTTTCTCTACATTTAATGAAGTTCAAAAGTTGCTCAGTAAGACCAACGGGAAAGTTGTTGGTGACTTGATGACACCAGCACCCATGGTGGTTCGTGA AACAACTAATATTGAGGATGCTGCAAGATTACTGCTGGAGACAAAGTTCCGTCGTCTTCCAGTTGTAGATCCAGACGGGAAACTGGTAAGAGATGTTTTT GTTTATGATTTGAACAACTTTAAAAGCTTCAGCTCTTTGTATCGTAAATACACTGTATGGAACTGGGTGTTGAAGGTTGGGATTATTACACGAGGAAACG TGGTAAGAGCTGCCCTGCAAATAAAGCGTTCGTTGGAATCAAATGCATAG
AA sequence Show only first row Show all	>Lus10041576 pacid=23147081 polypeptide=Lus10041576 locus=Lus10041576.g ID=Lus10041576.BGIv1.0 annot-version=v1.0 MDSLLLSDSPAFMRLPPAATHTTAAATLPNATPVVSFSHRHLPFPFLSRASPGPLRVSYRRCSSNSTVAASGTLMASALPNGVYTVGDFMTKKEDLCVVK PTTTVDEALETLVECRITGFPVIDDDWKLVLYAAPFSTFNEVQKLLSKTNGKVVGDLMTPAPMVVRETTNIEDAARLLLETKFRRLPVVDPDGKLVRDVF VYDLNNFKSFSSLYRKYTVWNWVLKVGIITRGNVVRAALQIKRSLESNA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36910		CBSX1, CDCP2, L...	LOSS OF THE TIMING OF ET AND J...		Lus10041576 [exp]	0	1
AT3G04310			unknown protein		Lus10004401 [exp]	2.8	0.8830
AT5G44710			unknown protein		Lus10038399 [exp]	3.7	0.8776
AT2G43950		OEP37, ATOEP37	ARABIDOPSIS CHLOROPLAST OUTER ...		Lus10003862 [exp]	4.0	0.8175
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10029624 [exp]	5.2	0.8296
AT3G57930			unknown protein		Lus10031233 [exp]	8.2	0.7785
AT1G80480		PTAC17	plastid transcriptionally acti...		Lus10018172 [exp]	13.9	0.8347
AT1G03475		LIN2, HEMF1, AT...	LESION INITIATION 2, Coproporp...		Lus10021087 [exp]	17.9	0.8243
AT3G57930			unknown protein		Lus10031807 [exp]	18.1	0.8529
AT4G21065			Tetratricopeptide repeat (TPR)...		Lus10006628 [exp]	19.7	0.7791
AT3G63095			Tetratricopeptide repeat (TPR)...		Lus10029648 [exp]	20.6	0.7776

Compare expression of checked genes

Lus10041576 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.