Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40810 332 / 1e-116 Cytochrome C1 family (.1.2) AT3G27240 332 / 6e-116 Cytochrome C1 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022327 [exp] 371 / 3e-131 AT5G40810 506 / 0.0 Cytochrome C1 family (.1.2) Lus10022328 [exp] 369 / 4e-130 AT5G40810 504 / 0.0 Cytochrome C1 family (.1.2) Lus10041579 [exp] 300 / 6e-103 AT3G27240 424 / 4e-150 Cytochrome C1 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G165000 [exp] 356 / 2e-125 AT5G40810 511 / 0.0 Cytochrome C1 family (.1.2) Potri.004G203800 [exp] 350 / 3e-123 AT5G40810 479 / 3e-172 Cytochrome C1 family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0318 [flax] [poplar] Cytochrome-c PF02167 [flax] [poplar] Cytochrom_C1 Cytochrome C1 family
Representative CDS sequence Show only first row Show all	>Lus10041577 pacid=23146667 polypeptide=Lus10041577 locus=Lus10041577.g ID=Lus10041577.BGIv1.0 annot-version=v1.0 ATGTCTCTTATCTCATACCGCGATCTGGTGGGTGTGGCATACACCGAAGAGGAAGCAAAGGCTATGGCTGCTGAGATTGAGGTTGAAGATGGTCCCAATG ATGAAGGCGAGATGTTTACTCGCCCAGGAAAACTAAGTGACCGGTTTCCTCAGCCTTATGCAAACGAGTCTGCTGCCAGATTTGCTAATGGAGGGGCCTA TCCTCCAGATCTCAGCCTCATCACAAAAGCTCGTCACAATGGCCAGAACTATGTGTTTGCCCTTTTAACTGGATATCGTGATCCTCCTGCTGGAATTTCG ATTCGTGAGGGCCTGCACTATAATCCGTACTTCCCAGGTGGAGCTATTGCAATGCCGAAGATGCTGAATGATGGTGCTGTTGAGTATGAAGATGGCACCC CAGCTACTGAAGCTCAGATGGGCAAAGATGTCGTATCGTTCTTGTCATGGGCTGCAGAACCAGAAATGGAAGAGAGGAAACTGATGGGGTTCAAGTGGAT ATTCCTATTGTCATTGGCATTGCTTCAGGTTGGATATCACCGATGTATGAGGTGGTCAGTTCTGAAATCTCGCAAGTTGATTGTCGATGTTGTCAACTAA
AA sequence Show only first row Show all	>Lus10041577 pacid=23146667 polypeptide=Lus10041577 locus=Lus10041577.g ID=Lus10041577.BGIv1.0 annot-version=v1.0 MSLISYRDLVGVAYTEEEAKAMAAEIEVEDGPNDEGEMFTRPGKLSDRFPQPYANESAARFANGGAYPPDLSLITKARHNGQNYVFALLTGYRDPPAGIS IREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGFKWIFLLSLALLQVGYHRCMRWSVLKSRKLIVDVVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40810			Cytochrome C1 family (.1.2)		Lus10041577 [exp]	0	1
AT2G33040		ATP3	gamma subunit of Mt ATP syntha...		Lus10042366 [exp]	4.5	0.9326
AT2G24400			SAUR-like auxin-responsive pro...		Lus10035716 [exp]	4.8	0.9433
AT1G31710			Copper amine oxidase family pr...		Lus10013355 [exp]	7.6	0.9403
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021047 [exp]	8.3	0.9367
AT3G52300		ATPQ	"ATP synthase D chain, mitocho...		Lus10023492 [exp]	9.4	0.9191
AT3G07425			unknown protein		Lus10020406 [exp]	14.4	0.9019
AT1G51980			Insulinase (Peptidase family M...		Lus10038262 [exp]	15.0	0.9340
AT5G08335		ATICMTB, ATSTE1...	ARABIDOPSIS THALIANA ISOPRENYL...		Lus10037842 [exp]	16.8	0.8866
AT1G19580		GAMMACA1 ,GAMMA...	gamma carbonic anhydrase 1 (.1...		Lus10028321 [exp]	17.5	0.9162
AT2G20420			ATP citrate lyase (ACL) family...		Lus10008238 [exp]	19.1	0.9220

Compare expression of checked genes

Lus10041577 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.