Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24970 661 / 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) AT5G50780 655 / 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) AT5G13130 592 / 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1.2) AT4G36290 433 / 3e-143 CRT1 compromised recognition of TCV 1 (.1) AT1G19100 432 / 2e-142 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) AT4G36280 431 / 2e-142 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) AT4G36270 295 / 4e-92 ATP binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016745 [exp] 634 / 0 AT4G24970 707 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10022438 [exp] 623 / 0 AT4G24970 736 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10014276 [exp] 430 / 1e-142 AT4G36290 697 / 0.0 compromised recognition of TCV 1 (.1) Lus10039959 [exp] 415 / 4e-136 AT1G19100 640 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10042100 [exp] 393 / 2e-125 AT1G19100 667 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10025978 [exp] 318 / 7e-101 AT4G36280 487 / 7e-168 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10001240 [exp] 311 / 2e-97 AT1G19100 532 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G100900 [exp] 675 / 0 AT4G24970 773 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.012G102800 [exp] 664 / 0 AT5G50780 769 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.003G167201 [exp] 658 / 0 AT4G24970 671 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.005G118400 [exp] 439 / 3e-145 AT4G36290 706 / 0.0 compromised recognition of TCV 1 (.1) Potri.012G089000 [exp] 432 / 7e-142 AT1G19100 741 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.015G079400 [exp] 412 / 5e-135 AT1G19100 706 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.011G144500 [exp] 100 / 1e-21 AT1G19100 114 / 5e-26 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Representative CDS sequence Show only first row Show all	>Lus10041578 pacid=23146747 polypeptide=Lus10041578 locus=Lus10041578.g ID=Lus10041578.BGIv1.0 annot-version=v1.0 ATGAAGCAGCAGTTGTGGTGGCAGAGTAGTAATCCTAGCAGCAGCAGTAGCAGTGGCAAGGACAAGGAGGAGGAGCAACAACCGTCTCCGATGAAGAAAG CCAAGCAAGAGGATGTTTTCGTCCCTTCGGGATTTCTGGCTCCTCTTCCCCGGAGAATGGTGCTTCCCCAGCAGGAGCAGCAGCAGCCGCAGCCCGCTGT CGTTGTAACGAATCATAATGATGATCCTCGAGACCAGTCGAGGGTTGGTCTTGACTCAAACGAGGGCGTATCTCCGGTGGCGCGTGGGTGTAAACAGTTT TGGAGGGCCGGCGACTATGAGGACTCCAACGGCATACTTCCTTCTGCCCACTCTTCCGGCGTTGGACTAGATCATGTGAGAGTCCACCCAAAGTTCTTGC ACTCTAATGCAACAAGTCATAAATGGGCGCTGGGAGCATTCGCTGAACTTCTGGACAATGCCGTTGATGAGATTGTTCATGGAGCCACTCGTGTCGACGT AGATGTCTTGCGAAACAAGAAAGACGGCTCGAACATGCTGCTCGTTCAAGACAACGGAGGCGGAATGACACCAGACAACATCAGGCAGTGCATGTCTCTT GGATACTCTGTCAAAAGCAAGAGTTCCAACACTATTGGCCAATATGGGAATGGGTTCAAGACGAGTACGATGAGGCTCGGGGCAGATGTCATAGTGTTTT CTCGCTGTGGAGGGCTCGATGGTGTGAGCGAAACGAGGAGTATTGGCCTGCTTTCGTACACCTTCCTGAGGTCAACCAAAAAGGAAGACATAGTGGTTCC CATGGTTGACTTTGTGAAAACCGGGCAGCAAGGGTGGAAGCAGCTGATAAGATCCTCTGTAGATGACTGGAACATGAATCTAACAACTATAATGTTGTGG TCTCCCTTTGTTACTGAAGATGACCTTATTTCCCAGTTGGACTTACTTGGAGATAAAGGTACTAGAATCATCATCTATAACCTTTGGGAGGATGATGAAG GAAAATTAGAGCTAGACTTTGATGTTGATCCACAAGACATCCAAATCAGAGGAGCCAACAGAGATGAGAAGAACATCGAAATGGCTAAGCAATATCCCAA TTCAAGGCATTTTCTAAGCTACAGACACTCATTGAGGAGCTATGCAGCAATTCTGTACCTAAGACTTCCATTGGAGTTTCGAATGACGTTGCGTGGTAAA CAAGTGGAACATCATGACACTGTGAAGGACATGATGATGTCTAAGACCATCACTTACAAACCAAAAGAGGTTGCTGATGGCATGGCGAGTGCAGTTCTGC AACTTGGGTTCGTCAAGGATGCTCATCATCACATCGATGTCCAGGGCTTTAATGTTTATCACAAGAATCGTCTTATCAAGCCTTTCTGGAGGGTCTGGAA TGCTGCTGGTAGTGATGGTCGTGGTGTTATAGGTGTTTTGGAAGCAAACTTTATCGAGCCAGCTCATGATAAACAAGGGTTTGAGCGCACCATCTCCCTT TCAAGACTGGAGAACAGATTGAAGGAATATCAAAAGGATTTTTGGACATCCAACTGCCATGACATTGGATATGCTCCAAGGAGGCCAATCAAAAAAAGTA ACGGCAGCACTAGTTCACAACCGAAGCAGCTTCAACAAGCTCGGGTGGACATTGATAAACCGCCGGTAGCACAAGAACCTGAATGTCGCGAGAATAAGCA ACGCCACTACTCAAGTTTGGACCATGTTGAAAGTTCAGGAAAAACACCTAGAGCAGTTGCATCTCCACCTACTGATCCGAAACATGACAAATATGATGAT GAAACCAAGATGTGGGGAGATAGTGGCAGCAGAAGGTCGAGAAAAAGAAGCAGTGAAGAAATGTTGGAAGTGGCGCAAAGTTTAGCAGAAGAACGAGTGA AGAACAAGAAGCTGGAAACTCAGCTTGAAGAGATGGCTAAGGAGTTGGACAAGTTTAAAAACGAAGCAGAGCAGTCGAGTAATGATGTTAAACAACTGAC AGAAATGCTGCATAGAGAAAAGGAGTGGACTAAGTGGAATGATGCTGAAAAGCAGAATTTGAGGGAGAGAATTGGAGAGTTGGAGGAAAAGGTGAGGGAG CTGGAACAAGACAAAGCTGGAGGGAGATAA
AA sequence Show only first row Show all	>Lus10041578 pacid=23146747 polypeptide=Lus10041578 locus=Lus10041578.g ID=Lus10041578.BGIv1.0 annot-version=v1.0 MKQQLWWQSSNPSSSSSSGKDKEEEQQPSPMKKAKQEDVFVPSGFLAPLPRRMVLPQQEQQQPQPAVVVTNHNDDPRDQSRVGLDSNEGVSPVARGCKQF WRAGDYEDSNGILPSAHSSGVGLDHVRVHPKFLHSNATSHKWALGAFAELLDNAVDEIVHGATRVDVDVLRNKKDGSNMLLVQDNGGGMTPDNIRQCMSL GYSVKSKSSNTIGQYGNGFKTSTMRLGADVIVFSRCGGLDGVSETRSIGLLSYTFLRSTKKEDIVVPMVDFVKTGQQGWKQLIRSSVDDWNMNLTTIMLW SPFVTEDDLISQLDLLGDKGTRIIIYNLWEDDEGKLELDFDVDPQDIQIRGANRDEKNIEMAKQYPNSRHFLSYRHSLRSYAAILYLRLPLEFRMTLRGK QVEHHDTVKDMMMSKTITYKPKEVADGMASAVLQLGFVKDAHHHIDVQGFNVYHKNRLIKPFWRVWNAAGSDGRGVIGVLEANFIEPAHDKQGFERTISL SRLENRLKEYQKDFWTSNCHDIGYAPRRPIKKSNGSTSSQPKQLQQARVDIDKPPVAQEPECRENKQRHYSSLDHVESSGKTPRAVASPPTDPKHDKYDD ETKMWGDSGSRRSRKRSSEEMLEVAQSLAEERVKNKKLETQLEEMAKELDKFKNEAEQSSNDVKQLTEMLHREKEWTKWNDAEKQNLRERIGELEEKVRE LEQDKAGGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24970			Histidine kinase-, DNA gyrase ...		Lus10041578 [exp]	0	1

Compare expression of checked genes

Lus10041578 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.