Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27240 394 / 4e-138 Cytochrome C1 family (.1) AT5G40810 390 / 6e-137 Cytochrome C1 family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022327 [exp] 466 / 2e-166 AT5G40810 506 / 0.0 Cytochrome C1 family (.1.2) Lus10022328 [exp] 462 / 8e-165 AT5G40810 504 / 0.0 Cytochrome C1 family (.1.2) Lus10041577 [exp] 303 / 4e-104 AT5G40810 343 / 5e-121 Cytochrome C1 family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G203800 [exp] 420 / 1e-148 AT5G40810 479 / 3e-172 Cytochrome C1 family (.1.2) Potri.009G165000 [exp] 415 / 1e-146 AT5G40810 511 / 0.0 Cytochrome C1 family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0318 [flax] [poplar] Cytochrome-c PF02167 [flax] [poplar] Cytochrom_C1 Cytochrome C1 family
Representative CDS sequence Show only first row Show all	>Lus10041579 pacid=23146840 polypeptide=Lus10041579 locus=Lus10041579.g ID=Lus10041579.BGIv1.0 annot-version=v1.0 ATGGCTGGAGGAGGAGTTATTCGCCAGCTTTTACAGAGGAAACTCCAGTCTCACACTATGGTATGCCCTCAGTATATATGGTTTGTGGTCAGGCCAGACT CCTCAGTACAGTCCGGAAATGTCTTTCCTGTACACTGCATCAACTATTCAACTGTTCCTTCAATGTCGTCTGTCCTCAATTCGAAGAAAGGTCATGATGA TGCTGGATCTTTTGGCGATAAGTCCATAAGAGCAATTGCACTACTCGGTGTTGGTCTTTCAGGGCTTCTAGGTTCTGCAGTTGCATCTGCTTCTGACGAG GCCGAACATGGTTTAGCTTCTCCAAACTATCCATGGCCTCACAGTGGTATCCTGAGTTCTTATGACCATGCTTCGATTCGTCGTGGGCACCAGGTCTATC AGCAAGTGTGTGCTTCCTGCCACTCTATGTCTCTTATCTCATACCGCGATCTGGTGGGTGTGGCATACACCGAAGAGGAAGCAAAGGCTATGGCTGCTGA TATAATGGCTATGGCTGCTGAGATTGAGGTTGAAGATGGTCCCAATGATGAAGGCGAGATGTTTACTCGCCCAGGAAAACTAAGTGACCGGTTTCCTCAG CCTTATGCAAACGAGTCTGCTGCCAGATTTGCTAATGGAGGGGCCTATCCTCCAGATCTCAGCCTCATCACAAAAATTCGTGAGGGCCTGCACTATAATC CGTACTTCCCAGGTGGAGCTATTGCAATGCCGAAGATGCTGAATGATGGTGCTGTTGAGTATGAAGATGGCACCCCAGCTACTGAAGCTCAGATGGGCAA AGATGTCGTATCGTTCTTGTCATGGGCTGCAGAACCAGAAATGGAAGAGAGGAAACTGATGGGGTTCAAGTGGATATTCCTACTGTCATTGGCATTGCTT CAGGTTGGATATCACCGACGTATGAGGTGGTCAGTTCTGAAATCTCGCAAGTTGATTGTCGATGTTGTCAACTAA
AA sequence Show only first row Show all	>Lus10041579 pacid=23146840 polypeptide=Lus10041579 locus=Lus10041579.g ID=Lus10041579.BGIv1.0 annot-version=v1.0 MAGGGVIRQLLQRKLQSHTMVCPQYIWFVVRPDSSVQSGNVFPVHCINYSTVPSMSSVLNSKKGHDDAGSFGDKSIRAIALLGVGLSGLLGSAVASASDE AEHGLASPNYPWPHSGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEEEAKAMAADIMAMAAEIEVEDGPNDEGEMFTRPGKLSDRFPQ PYANESAARFANGGAYPPDLSLITKIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGFKWIFLLSLALL QVGYHRRMRWSVLKSRKLIVDVVN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27240			Cytochrome C1 family (.1)		Lus10041579 [exp]	0	1
AT1G22450		ATCOX6B2, COX6B	CYTOCHROME C OXIDASE 6B2, cyto...		Lus10020941 [exp]	1.4	0.7482
AT1G13560		AAPT1, ATAAPT1	aminoalcoholphosphotransferase...		Lus10019149 [exp]	7.1	0.6830
AT1G80500			SNARE-like superfamily protein...		Lus10041670 [exp]	8.5	0.6956
AT1G22450		ATCOX6B2, COX6B	CYTOCHROME C OXIDASE 6B2, cyto...		Lus10008716 [exp]	11.0	0.6780
AT4G31490			Coatomer, beta subunit (.1)		Lus10027160 [exp]	12.2	0.7463
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Lus10033179 [exp]	15.7	0.7284
AT3G13410			unknown protein		Lus10009853 [exp]	23.7	0.6687
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Lus10002958 [exp]	30.4	0.5534
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Lus10010618 [exp]	50.2	0.6563
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Lus10016418 [exp]	51.0	0.6105

Compare expression of checked genes

Lus10041579 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.