Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01750 613 / 0 Ankyrin repeat family protein (.1) AT3G04140 469 / 5e-157 Ankyrin repeat family protein (.1) AT5G02620 77 / 2e-14 ATANK1, ANK1 ankyrin-like1 (.1) AT2G01680 75 / 7e-14 Ankyrin repeat family protein (.1) AT5G51160 72 / 4e-13 Ankyrin repeat family protein (.1) AT1G03670 72 / 5e-13 ankyrin repeat family protein (.1) AT2G31820 71 / 2e-12 Ankyrin repeat family protein (.1) AT1G07710 69 / 4e-12 Ankyrin repeat family protein (.1) AT1G05640 65 / 9e-11 Ankyrin repeat family protein (.1) AT5G60070 61 / 1e-09 ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022330 [exp] 1220 / 0 AT3G01750 633 / 0.0 Ankyrin repeat family protein (.1) Lus10036974 [exp] 318 / 1e-100 AT3G01750 308 / 2e-97 Ankyrin repeat family protein (.1) Lus10008329 [exp] 76 / 7e-14 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1) Lus10041537 [exp] 72 / 7e-13 AT5G51160 350 / 2e-117 Ankyrin repeat family protein (.1) Lus10005432 [exp] 71 / 1e-12 AT1G07710 720 / 0.0 Ankyrin repeat family protein (.1) Lus10015224 [exp] 69 / 5e-12 AT1G07710 727 / 0.0 Ankyrin repeat family protein (.1) Lus10025289 [exp] 69 / 6e-12 AT1G07710 577 / 0.0 Ankyrin repeat family protein (.1) Lus10024844 [exp] 69 / 6e-12 AT1G34050 353 / 4e-114 Ankyrin repeat family protein (.1) Lus10020209 [exp] 69 / 7e-12 AT1G03670 175 / 6e-47 ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G335400 [exp] 842 / 0 AT3G01750 701 / 0.0 Ankyrin repeat family protein (.1) Potri.008G179100 [exp] 633 / 0 AT3G01750 579 / 0.0 Ankyrin repeat family protein (.1) Potri.010G055700 [exp] 601 / 0 AT3G01750 514 / 1e-175 Ankyrin repeat family protein (.1) Potri.018G042200 [exp] 83 / 2e-16 AT1G10340 268 / 6e-82 Ankyrin repeat family protein (.1.2) Potri.007G145200 [exp] 77 / 1e-14 AT2G31820 751 / 0.0 Ankyrin repeat family protein (.1) Potri.006G214600 [exp] 76 / 3e-14 AT1G07710 565 / 0.0 Ankyrin repeat family protein (.1) Potri.017G006800 [exp] 76 / 4e-14 AT2G31820 868 / 0.0 Ankyrin repeat family protein (.1) Potri.016G080700 [exp] 73 / 3e-13 AT1G07710 570 / 0.0 Ankyrin repeat family protein (.1) Potri.005G069300 [exp] 72 / 8e-13 AT1G07710 695 / 0.0 Ankyrin repeat family protein (.1) Potri.013G017254 [exp] 71 / 1e-12 AT5G51160 151 / 7e-41 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10041582 pacid=23146799 polypeptide=Lus10041582 locus=Lus10041582.g ID=Lus10041582.BGIv1.0 annot-version=v1.0 ATGCCTCCTCCTACATATTTGCCACTGAGATGGGAAAGCACAGGTGACCAGTGGTGGTATGCTGCTCCTATTGACTGGGCAGCAGCCAATGGCCACTACG ACTTGGTTAGGGAGCTTCTTCGGATAGACAAAAATCACCTCATCAACCTCACCTCCCTCAGGCGAATTCGTCGGCTCGAGACCGTGTGGGACGATGAGGA ACAGTTCATTGATGTGGCCAAGTGCAGGTCCCGTGTAGCAAGGAAGCTTTTCCTTGAATGTGAGTCCAAGAAGGGCAAGAACAGCAACAATTCACTTGTT CAGTCTGGATATGGTGGATGGCTCATGTACACTGCTGCATCTGCTGGGGATTTGAGCTTTGTACAAGAGCTCCTTCAGAGGAACCCTCTGCTTGTGTTTG GTGAAGGAGAATATGGGGTTACTGATGTTCTCTATGCTGCTTCCAGGAGCAAGAACACCCAGGTTTTTAGGCTGGTTTATGACTTTGTTGTATCTCCAAG GTTCTTGAAAGGTGAGGAGCTAGAGGAACACTTAGGGGAGGGAATTCCTTCTCTTTATAAGTGGGAAATGTTGAATAGAGCCCTTCATGCTGCTGCCAGA GGAGGAAATGTAGCCATTCTGAAAGATCTTCTTGGAAATTGTACCAGTGATATCTTGAGTTACAGAGATAAACAGGGCTCTACTATCTTACATGCTGCAG CTGCCAAAGGTCAAGTTGAGGTAGTGAAGTATCTTGCAGCATCATTTGATGATGTGATCAGCTCAACTGACAATCTAGGCAACACCGCGTTGCACACTGC TTCTTACCGCGGACAGTTACACGTAGTTGAAGCTCTGATAGAAGCATACCCTTGTATGGTTTCCTCAACAGACAACGCTGGAGGAACTTTTCTCCACACT ACAGTTTCCGGCTTCCAGAACCCGGCTTTCAGAAGGCTGGACAGGCAGGTTGAGCTGATGAAGCAGTTAATAAGTGGTGGAAAAGGGTTCCACATTGAAC AAGTTATCAATGCCAAGAACAACGATGGAAGAACTGCACTCCACACTGCCATCCTTGCCAATGTTCACTCTGATCTGGTCCAGCTACTAATGGAGGTGAA ATCTATACACGTGAATGCTCGAGATGCAGATGGGATGACCCCTCTCGATCTCCTGAAGCAACGACCTCGGTCTGCTTCGTCTGATTATCTCATCAGACAG CTGATTTCAGCAGGTGGAATGTTTGGTGGCTGCACCGCAAGAAGAGCAATAGCTTCGAGGCTGAAGATGCAGGGCGGGTTAGGAAGTCCTGGGACGTCGT TCAGGCTATCTGATGCAGAAGTTTTTCTGTACACCGGAATCGAAGTTGCATCATCAGATGGAAATGGTGTTGGTGGACAAGTCAGTACTGGATTGAGTTC ATCGTCTTCGATCGATATACATCAACCAAATGCAGCAAGTTGCACAAAAGAAGAGCCACAAAGCCATGCAGCTAAGAGGATAAAAAGGGTGCTTCAATGG ACTAGAAGGAAACACAGGAAGCCTGCAAGTGGAAGTCACAGCAACTACAACAATGATATGATGAAATCTGCAGCAATGGATCAAGACGAAACGAGACAAG CTCCTCTTCGCCAGCGATTTGCCAATCCATCTTCATCACCTCCTCAAAGCAACAAGAGAACACTGGCAGTGAGGAGCAACCAATCAAGTCCAACCTCCAA GAAAAAGCTTGCTTCAGGACTAGTCCATGGAGTTCTCTTGCAGGCACTACCACAAATAACAACAGTTCCTGGAGGGAAATCACACACAAGTTCGTTCTCA ATATCGCCATTTCCGTCGCCAGGATCCATGGACAAGGCAAAGGGTATTATTATGTTCAGTGAAGCTGAGGCATCCTGCTCCAACACTCAGAATGAATTGG TTGATGATAATGATGGTGTAATACCAAGAAGAAGAAGCATGGGGAAGAAAGAAGGTTCACCAAGAAGCCCGAATCGTCACAGGAGGTCAAGAAGCCAGTA CTTTTGTTTTGGAGGAGCTGGTCTATCTGTGAAATCGCCAGTTGGTAGGCACAGGAGGCAGCAGAGTGCTACTACTGCCCCATCAGTTGTGTCAGTTGCA TAG
AA sequence Show only first row Show all	>Lus10041582 pacid=23146799 polypeptide=Lus10041582 locus=Lus10041582.g ID=Lus10041582.BGIv1.0 annot-version=v1.0 MPPPTYLPLRWESTGDQWWYAAPIDWAAANGHYDLVRELLRIDKNHLINLTSLRRIRRLETVWDDEEQFIDVAKCRSRVARKLFLECESKKGKNSNNSLV QSGYGGWLMYTAASAGDLSFVQELLQRNPLLVFGEGEYGVTDVLYAASRSKNTQVFRLVYDFVVSPRFLKGEELEEHLGEGIPSLYKWEMLNRALHAAAR GGNVAILKDLLGNCTSDILSYRDKQGSTILHAAAAKGQVEVVKYLAASFDDVISSTDNLGNTALHTASYRGQLHVVEALIEAYPCMVSSTDNAGGTFLHT TVSGFQNPAFRRLDRQVELMKQLISGGKGFHIEQVINAKNNDGRTALHTAILANVHSDLVQLLMEVKSIHVNARDADGMTPLDLLKQRPRSASSDYLIRQ LISAGGMFGGCTARRAIASRLKMQGGLGSPGTSFRLSDAEVFLYTGIEVASSDGNGVGGQVSTGLSSSSSIDIHQPNAASCTKEEPQSHAAKRIKRVLQW TRRKHRKPASGSHSNYNNDMMKSAAMDQDETRQAPLRQRFANPSSSPPQSNKRTLAVRSNQSSPTSKKKLASGLVHGVLLQALPQITTVPGGKSHTSSFS ISPFPSPGSMDKAKGIIMFSEAEASCSNTQNELVDDNDGVIPRRRSMGKKEGSPRSPNRHRRSRSQYFCFGGAGLSVKSPVGRHRRQQSATTAPSVVSVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01750			Ankyrin repeat family protein ...		Lus10041582 [exp]	0	1
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10019694 [exp]	5.5	0.8094
AT4G03415			Protein phosphatase 2C family ...		Lus10039802 [exp]	6.0	0.8082
AT4G34880			Amidase family protein (.1)		Lus10025066 [exp]	7.2	0.7185
AT1G63670			Protein of unknown function (D...		Lus10035490 [exp]	9.7	0.7616
AT5G62890			Xanthine/uracil permease famil...		Lus10010707 [exp]	17.4	0.7780
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10005559 [exp]	20.6	0.7642
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Lus10006324 [exp]	23.5	0.7518
AT5G28650	WRKY	ATWRKY74, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10021999 [exp]	23.7	0.7232
AT2G01940	C2H2ZnF	SGR5, ATIDD15	SHOOT GRAVITROPISM 5, ARABIDOP...		Lus10026369 [exp]	27.9	0.6946
AT2G19090			Protein of unknown function (D...		Lus10020009 [exp]	28.0	0.7414

Compare expression of checked genes

Lus10041582 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.