Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20510 179 / 4e-54 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT5G63380 176 / 5e-53 AMP-dependent synthetase and ligase family protein (.1) AT4G05160 164 / 3e-48 AMP-dependent synthetase and ligase family protein (.1) AT1G20480 157 / 7e-46 AMP-dependent synthetase and ligase family protein (.1) AT5G38120 156 / 2e-45 4CL8 AMP-dependent synthetase and ligase family protein (.1) AT4G19010 156 / 2e-45 AMP-dependent synthetase and ligase family protein (.1) AT1G20500 155 / 4e-45 AMP-dependent synthetase and ligase family protein (.1) AT3G21240 135 / 1e-37 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) AT1G65060 130 / 5e-36 4CL3 4-coumarate:CoA ligase 3 (.1.2) AT3G21230 127 / 8e-35 4CL5 4-coumarate:CoA ligase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002791 [exp] 174 / 6e-52 AT5G63380 688 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10036994 [exp] 172 / 2e-51 AT5G63380 516 / 4e-179 AMP-dependent synthetase and ligase family protein (.1) Lus10015998 [exp] 166 / 7e-49 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10012280 [exp] 167 / 2e-48 AT1G20510 825 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10015999 [exp] 164 / 3e-48 AT1G20510 692 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10022336 [exp] 145 / 1e-45 AT1G20510 95 / 5e-24 OPC-8:0 CoA ligase1 (.1.2) Lus10021431 [exp] 151 / 2e-43 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10016630 [exp] 149 / 2e-43 AT4G19010 532 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10016135 [exp] 149 / 6e-43 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G033600 [exp] 190 / 4e-58 AT5G63380 598 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.012G094800 [exp] 177 / 3e-53 AT5G63380 657 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.015G092300 [exp] 176 / 6e-53 AT5G63380 594 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.012G094900 [exp] 175 / 2e-52 AT5G63380 604 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.012G095000 [exp] 174 / 3e-52 AT5G63380 615 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.002G012800 [exp] 167 / 2e-49 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.010G230200 [exp] 167 / 3e-49 AT1G20510 478 / 7e-164 OPC-8:0 CoA ligase1 (.1.2) Potri.005G248500 [exp] 166 / 3e-49 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.008G031500 [exp] 166 / 3e-49 AT1G20510 466 / 3e-159 OPC-8:0 CoA ligase1 (.1.2) Potri.010G057000 [exp] 158 / 4e-46 AT5G63380 530 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10041584 pacid=23147029 polypeptide=Lus10041584 locus=Lus10041584.g ID=Lus10041584.BGIv1.0 annot-version=v1.0 ATGGCTCTTATTTTCTGGGCCCAAATTCAGATAGGACGGGCTCTTGTTGCGTATGGGCCGAAAGCTTCGGAAGCTCTGCCTCCTGGGAAACAGGGTGAGC TATGGATCAGAGGGCCAACCATAATGAAAGGCAAGAAAGCTCCTGAAGGGTTCCTCTATGTAGTGGATCGGATAAAAGAACTCATTAAGTACAAAGGATA TCAGGTTGCCCCTGCAGAACTTGAGCAATTGCTGCAGTCCCATCTGGGAATACCTGACGCAGCCGTCATCCCGTATCCGGATGAGGAGGCAGGACAGGTG CCATTTGCATTTGTGGTGAGGGGTGCAGGGAGCAGCAGCCTTGATGCAGGATCAGTAATGGAGTTCGTAGCAAAACAGGTTGCGCCTTACAAGAAGATAA GGAGGGTGGCGTTTGTGAGTTCAATACCTAAAAGCCCTGCTGGTAAAATTCTGAGGAAGGACTTGAAGAAGATGCTGCCAGCAACTCCCAAGCCTAGATT GTAG
AA sequence Show only first row Show all	>Lus10041584 pacid=23147029 polypeptide=Lus10041584 locus=Lus10041584.g ID=Lus10041584.BGIv1.0 annot-version=v1.0 MALIFWAQIQIGRALVAYGPKASEALPPGKQGELWIRGPTIMKGKKAPEGFLYVVDRIKELIKYKGYQVAPAELEQLLQSHLGIPDAAVIPYPDEEAGQV PFAFVVRGAGSSSLDAGSVMEFVAKQVAPYKKIRRVAFVSSIPKSPAGKILRKDLKKMLPATPKPRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63380			AMP-dependent synthetase and l...		Lus10041584 [exp]	0	1
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10013395 [exp]	6.0	0.8149
AT3G24420			alpha/beta-Hydrolases superfam...		Lus10017735 [exp]	12.1	0.8278
AT4G18770	MYB	ATMYB98	myb domain protein 98 (.1)		Lus10042111 [exp]	16.9	0.8124
AT5G23940		PEL3, DCR, EMB3...	PERMEABLE LEAVES3, EMBRYO DEFE...		Lus10039255 [exp]	18.2	0.8089
					Lus10030338 [exp]	21.8	0.6819
AT2G30900		TBL43	TRICHOME BIREFRINGENCE-LIKE 43...		Lus10007367 [exp]	24.0	0.8053
AT4G25830			Uncharacterised protein family...		Lus10019999 [exp]	29.5	0.7939
AT4G13150			unknown protein		Lus10025925 [exp]	30.3	0.7975
					Lus10042024 [exp]	30.3	0.7948
					Lus10038154 [exp]	35.4	0.7882

Compare expression of checked genes

Lus10041584 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.