Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14260 760 / 0 Rubisco methyltransferase family protein (.1.2.3) AT3G07670 112 / 2e-26 Rubisco methyltransferase family protein (.1) AT3G55080 82 / 2e-16 SET domain-containing protein (.1.2) AT1G14030 65 / 7e-11 Rubisco methyltransferase family protein (.1) AT5G17240 60 / 2e-09 SDG40 SET domain group 40 (.1) AT2G18850 49 / 5e-06 SET domain-containing protein (.1.2) AT1G24610 42 / 0.0007 Rubisco methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022333 [exp] 989 / 0 AT5G14260 753 / 0.0 Rubisco methyltransferase family protein (.1.2.3) Lus10012309 [exp] 98 / 2e-21 AT3G07670 756 / 0.0 Rubisco methyltransferase family protein (.1) Lus10040345 [exp] 67 / 1e-11 AT3G55080 456 / 9e-158 SET domain-containing protein (.1.2) Lus10036780 [exp] 65 / 7e-11 AT1G14030 643 / 0.0 Rubisco methyltransferase family protein (.1) Lus10021783 [exp] 58 / 9e-09 AT1G24610 643 / 0.0 Rubisco methyltransferase family protein (.1) Lus10035757 [exp] 50 / 3e-06 AT5G17240 485 / 1e-168 SET domain group 40 (.1) Lus10034599 [exp] 49 / 6e-06 AT1G24610 607 / 0.0 Rubisco methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G066500 [exp] 768 / 0 AT5G14260 783 / 0.0 Rubisco methyltransferase family protein (.1.2.3) Potri.014G169300 [exp] 105 / 4e-24 AT3G07670 754 / 0.0 Rubisco methyltransferase family protein (.1) Potri.008G090500 [exp] 67 / 9e-12 AT1G14030 630 / 0.0 Rubisco methyltransferase family protein (.1) Potri.004G081400 [exp] 57 / 3e-08 AT5G17240 543 / 0.0 SET domain group 40 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09273 [flax] [poplar] Rubis-subs-bind Rubisco LSMT substrate-binding
Representative CDS sequence Show only first row Show all	>Lus10041585 pacid=23146693 polypeptide=Lus10041585 locus=Lus10041585.g ID=Lus10041585.BGIv1.0 annot-version=v1.0 ATGGAAGTCGTCCCCACTGCTTCCATGAGCAACACCTACTCCATCCCTCCTCTCCCCTTCCTCTCTAGGGTTTCCATTTCCCTATTTCACATCACCCGCC GTCAGCATCGACAACAGCAACAACTACGCCGCCGCCGCTCCCTGTCTATCCATCGGAACCGCGGCTGCTGCTTTGCCTCCACCCCAGAGGCCCTGGTCGC TTCCAATTCGAGGAAAGAAGACGGAAAGCGTGGAGTTTCGAGCAAGAGAGAAGGACACGAGGGCGTGGAGGATGAGAAGCTTGGGGATTTGAAGTCTTGG ATGCATCAGAACGGCCTTCCTCCTTGCAAAGTTGTTCTTAAAGATAGGCCTTCCTTCGATGAGAACCACTGCTCCATTCATTACGTTGCCGCCAGTGAGG ATCTTGAGGCTGGCGATGTGGCGTTCTCGGTCCCGAATTCTCTTGTTGTGACTCTTGATAGGGTCTTAGGAAACGAGACAGTAGCGGAATTGTTAACAAC AAATAAACTGTCGGAGTTAGCGTGCTTGGCATTGTATTTGATGTACGAGAAGAAGCAGGGAAATAAGTCATTCTGGTACCCATACATACGAGAACTTGAT CGTCAGCGAGGTCGAGGTCAGCTTGCTGTGGAATCTCCACTGCTGTGGTCAGAGGCTGAATTGGCTTACCTGACAGGTAGCCCAACTCAGGCTGAAATTG TGGAAAGAGCAGATGGCATCAAGAGAGAATACGATGAACTTGACACTGTCTGGTTCATGGCTGGTTCCTTGTTTCAGCAATATCCTTTTGATATACCTAC AGAAGCGTTTTCGTTTGAGATCTTCAAACAAGCTTTTGTTGCTGTTCAGTCTTGTGTGGTGCATTTGCAGAAAGTCAGTTTGGCTCGTAGGTTTGCTTTG GTTCCTCTTGGCCCCCCGCTGCTAGCTTACGGAAGCAACTGTAAGGCAATGCTAAGTGCTGTTGAAGGTGCTGTTGAACTAGTAGTTGATCGCTCATACA AGGCCGGTGAACCAATTGCTGTCTGGTGTGGACCACAGCCCAATTCAAGATTGCTTATAAACTATGGTTTTGTTGATGAGGGCAATGCTTATGATCGGCT AGTGATGAAGGCAGCACTAAACACTGAGGATCCTCAATATCAGGACAAGAGATTAGTTGCTCAAAGAAACGGCAAGCTATCTATGCAAGACTTTGTTGTC CAAGTGGGAAAGGAAAAGGAAGCTGTGGCTGAAATGCTTCCTTATTTGCGATTAGGCTATGTATCAGATCCTTCTGAGATGGAATCTGTCATATCTTCTC AAGGACCTGTTTGTCCAGTTAGCCCTTGCATGGAGCGAGCGGTTCTGGATCAGCTTGCTGAGTATTTTAACAGGCGTCTTGATTTATATCCAACTAGCTT GAGCGAAGATGAATCTATGTTAGCAGAAGAGAAGTTGAACCCAAAGAAGAGAGTTGCTACGCAGCTGGTGAGGTTGGAAAAGAAAATACTTCATGCTTGT TTGCAGGCAACATGCGATCTCATAGACGAGCTACCTGATGACATGATCTCTCCATGTCCAGCTCCTTATGCTCCTTCATTGAAATGA
AA sequence Show only first row Show all	>Lus10041585 pacid=23146693 polypeptide=Lus10041585 locus=Lus10041585.g ID=Lus10041585.BGIv1.0 annot-version=v1.0 MEVVPTASMSNTYSIPPLPFLSRVSISLFHITRRQHRQQQQLRRRRSLSIHRNRGCCFASTPEALVASNSRKEDGKRGVSSKREGHEGVEDEKLGDLKSW MHQNGLPPCKVVLKDRPSFDENHCSIHYVAASEDLEAGDVAFSVPNSLVVTLDRVLGNETVAELLTTNKLSELACLALYLMYEKKQGNKSFWYPYIRELD RQRGRGQLAVESPLLWSEAELAYLTGSPTQAEIVERADGIKREYDELDTVWFMAGSLFQQYPFDIPTEAFSFEIFKQAFVAVQSCVVHLQKVSLARRFAL VPLGPPLLAYGSNCKAMLSAVEGAVELVVDRSYKAGEPIAVWCGPQPNSRLLINYGFVDEGNAYDRLVMKAALNTEDPQYQDKRLVAQRNGKLSMQDFVV QVGKEKEAVAEMLPYLRLGYVSDPSEMESVISSQGPVCPVSPCMERAVLDQLAEYFNRRLDLYPTSLSEDESMLAEEKLNPKKRVATQLVRLEKKILHAC LQATCDLIDELPDDMISPCPAPYAPSLK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14260			Rubisco methyltransferase fami...		Lus10041585 [exp]	0	1
AT1G04620		HCAR	7-hydroxymethyl chlorophyll a ...		Lus10043145 [exp]	1.0	0.9506
AT1G23400		CAF2, ATCAF2	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10013029 [exp]	2.0	0.9240
AT2G39190		ATATH8	Protein kinase superfamily pro...		Lus10023508 [exp]	2.4	0.9244
AT1G12800			Nucleic acid-binding, OB-fold-...		Lus10000288 [exp]	2.8	0.9372
AT4G34730			ribosome-binding factor A fami...		Lus10018065 [exp]	3.7	0.9134
AT4G01800		AtcpSecA, AGY1,...	Arabidopsis thaliana chloropla...		Lus10009973 [exp]	10.7	0.9181
AT1G29240			Protein of unknown function (D...		Lus10007276 [exp]	11.7	0.8706
AT5G58870		FTSH9	FTSH protease 9 (.1)		Lus10018210 [exp]	12.1	0.8698
AT2G30390		FC2, FC-II, ATF...	ferrochelatase 2 (.1.2)		Lus10004292 [exp]	12.2	0.8867
AT2G34860		EDA3	embryo sac development arrest ...		Lus10023593 [exp]	12.2	0.9220

Compare expression of checked genes

Lus10041585 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.