Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14250 450 / 2e-154 CSN3, FUS11, COP13 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) AT1G75990 69 / 5e-12 PAM domain (PCI/PINT associated module) protein (.1) AT1G20200 62 / 4e-10 HAP15, EMB2719 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022337 [exp] 685 / 0 AT5G14250 570 / 0.0 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Lus10032065 [exp] 572 / 0 AT5G14250 503 / 7e-177 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Lus10014595 [exp] 513 / 1e-174 AT5G14250 445 / 3e-150 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Lus10005061 [exp] 69 / 3e-12 AT1G20200 756 / 0.0 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1) Lus10027832 [exp] 69 / 7e-12 AT1G20200 756 / 0.0 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1) Lus10034469 [exp] 64 / 2e-10 AT1G20200 798 / 0.0 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1) Lus10025072 [exp] 45 / 0.0002 AT1G75990 338 / 3e-112 PAM domain (PCI/PINT associated module) protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G334200 [exp] 560 / 0 AT5G14250 507 / 1e-179 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Potri.017G066300 [exp] 545 / 0 AT5G14250 522 / 0.0 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Potri.009G136900 [exp] 60 / 4e-09 AT1G20200 676 / 0.0 HAPLESS 15, EMBRYO DEFECTIVE 2719, PAM domain (PCI/PINT associated module) protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01399 [flax] [poplar] PCI PCI domain
Representative CDS sequence Show only first row Show all	>Lus10041586 pacid=23146816 polypeptide=Lus10041586 locus=Lus10041586.g ID=Lus10041586.BGIv1.0 annot-version=v1.0 ATGAACGCAGTGGAAGCACTTTTGACCCAAATCCAGGGGTTGTCGACCAGTCCGAATGACCTGGCGGTGCTTCACACGCATTTGAAACAAGCAGACGATG CACTTCGTGCCGAGTCGGCCAGGCTGCTGCCTTTTCTCGACCAGCTTGACCCTGCAATCCATTCTCTTGGTTACCTCTATCTTCTAGATGCTTGTGCTTC TGGCCCAGTATCCAAAGAGCAGGCAGCGACTCTGCTTCTGATTTCTTCAAGGTTCATCACTTCCTGCAGTGCTGAGCAAATTCGTTTGGCACCCGATAAG TTCATAGCCATTTGCAAGAGATTCAAGGATCATGTTATGTTAATCGAAGCACCTATTCGTGGGATAGCTCCACTGCTGACAGCTGTACGGAAGCTTCAAT CGTCCTCCGAACATTTGACTACTCTGCATCCAGATTTTCTTCAACTTTGTTTGCTAACAAAGTGCTATAGAACTGGACTTTCACTTCTCGATGACGATGT TTTTGAGGTTGATCAGCCAAGAGACATATTCCTTTATTGTTACTACGGGGGAATGATCTGCATTGGACAAAAGCATTTTCAGAAAGCCTTGGAACTTTTA CATAATGTTGTTACTGCACCAATGACTTCAATTAATGCTATAGCTGTTGAAGCTTACAAGAAATATGCATTAGTGTCTCTCATTCACCATGGACAATTCT CATCTAATCTTCCCAAGTATACTTCATCAGCTGCACAGAGGAATCTAAAGAACTTCTGCCATCCCTACATTGAGTTAGCCCTTACTTACAGCACTGGAAA GATTGCAGAGTTAGACGAATATGTTCAAAAGCACCGAGAAAAGTTCAAAAGCGACAACAATCTCGGACTGGTGAAACAAGTTGTATCGTCTATGTACAAG AGAAACATCCAGAGGTTGACCCAGACATATTTAACCCTTTCCCTGCAAGACATAGCTAATACTGTTCATCTCAATAGTGCTAAGGACGCAGAGATGCGAG TCCTTCAAATGATTCAAGACGGTGAAATATATGCTATTTATTGTTACTACGGGGGTATGATCTGCATTGGACAAAAGCATTTTCAGAAAGCCTTGGAGCT TTTGCATAATGTTGTTACTGCACCAATGACTTCGATAAATGCTATAGCTGTTGAAGCTTACAAGAAATATGCATTAGTGTCTCTCATTCACCATGGACAA TTCTCATCTAATCTTCCCAAGTATACTTCATCAGCTGCACAGAGGAATCTGAAGAACTTCTGTCACCCCTATATTGAGTTGGCCAATACTTACAGCACTG GAAAGATTGAAGAATTAGCCGCATATGTTCAAAAGCACCGAGAAAAGTTCGAAAGCGACAACAATCTCGGACTGGTGAAACAAGTTGTATCGTCTATGTA CAAGAGAAACATCCAGAGGTTGACACAGACATATTTAACCCTTTCCCTGCAAGACATAGCTAATACTGTTCATCTCAATAGTGCTAAGGACGCAGAGATG CGAGTCCTTCAAATGATTCAAGACGGTGAAATATATGCTACAATCAACCAGAAAGATGGCATGGTGAGGTTTTTGGAGGATCCAGAACAATACAAGACGA GTGGAATGATCGAGCGTATTGACTCTTCAATCCAAAGGTTAATGACAGTATCAAAGAAGTTGACGATGATGGATGAACAGATGTCTTGCGATCCCTTATA CCTAACAAAGGCTGGAAGGGAGCGTCAGAGATTCGATTTCGATGATTTCGACCCTGTTCCTCAGAAATTCAACATGTGA
AA sequence Show only first row Show all	>Lus10041586 pacid=23146816 polypeptide=Lus10041586 locus=Lus10041586.g ID=Lus10041586.BGIv1.0 annot-version=v1.0 MNAVEALLTQIQGLSTSPNDLAVLHTHLKQADDALRAESARLLPFLDQLDPAIHSLGYLYLLDACASGPVSKEQAATLLLISSRFITSCSAEQIRLAPDK FIAICKRFKDHVMLIEAPIRGIAPLLTAVRKLQSSSEHLTTLHPDFLQLCLLTKCYRTGLSLLDDDVFEVDQPRDIFLYCYYGGMICIGQKHFQKALELL HNVVTAPMTSINAIAVEAYKKYALVSLIHHGQFSSNLPKYTSSAAQRNLKNFCHPYIELALTYSTGKIAELDEYVQKHREKFKSDNNLGLVKQVVSSMYK RNIQRLTQTYLTLSLQDIANTVHLNSAKDAEMRVLQMIQDGEIYAIYCYYGGMICIGQKHFQKALELLHNVVTAPMTSINAIAVEAYKKYALVSLIHHGQ FSSNLPKYTSSAAQRNLKNFCHPYIELANTYSTGKIEELAAYVQKHREKFESDNNLGLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVHLNSAKDAEM RVLQMIQDGEIYATINQKDGMVRFLEDPEQYKTSGMIERIDSSIQRLMTVSKKLTMMDEQMSCDPLYLTKAGRERQRFDFDDFDPVPQKFNM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14250		CSN3, FUS11, CO...	FUSCA 11, COP9 SIGNALOSOME SUB...		Lus10041586 [exp]	0	1
AT5G14250		CSN3, FUS11, CO...	FUSCA 11, COP9 SIGNALOSOME SUB...		Lus10022337 [exp]	1.0	0.9442
AT1G04590		EMB2748	unknown protein		Lus10019008 [exp]	3.0	0.9151
AT2G19560		ESSP1, AtTHP1, ...	ectopic expression of seed sto...		Lus10008561 [exp]	3.7	0.9082
AT2G26990		COP12, ATCSN2, ...	FUSCA 12, CONSTITUTIVE PHOTOMO...		Lus10041295 [exp]	5.8	0.9155
AT3G47630			unknown protein		Lus10023597 [exp]	6.7	0.9058
AT3G51270			protein serine/threonine kinas...		Lus10013682 [exp]	7.5	0.9106
AT5G50840			unknown protein		Lus10040383 [exp]	7.7	0.8928
AT3G51270			protein serine/threonine kinas...		Lus10017941 [exp]	8.5	0.8945
AT3G52640			Zn-dependent exopeptidases sup...		Lus10007387 [exp]	8.5	0.9094
AT3G54170		ATFIP37	FKBP12 interacting protein 37 ...		Lus10018090 [exp]	9.2	0.9102

Compare expression of checked genes

Lus10041586 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.