Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40840 181 / 2e-47 SYN2, ATRAD21.1 Sister chromatid cohesion 1 \(SCC1\) protein homolog 2, Rad21/Rec8-like family protein (.1.2.3) AT5G16270 117 / 2e-26 SYN4, ATRAD21.3 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) AT3G59550 100 / 3e-21 ATSYN3, SYN3, ATRAD21.2 SISTER CHROMATID COHESION 1 PROTEIN 3, Rad21/Rec8-like family protein (.1) AT5G05490 69 / 8e-12 SYN1 BP5, SYN1 BP2, SYN1., DIF1, ATREC8 SYNAPTIC 1, DETERMINATE, INFERTILE 1, Rad21/Rec8-like family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022338 [exp] 1608 / 0 AT5G40840 179 / 1e-46 Sister chromatid cohesion 1 \(SCC1\) protein homolog 2, Rad21/Rec8-like family protein (.1.2.3) Lus10026862 [exp] 114 / 2e-25 AT5G16270 382 / 3e-114 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Lus10023028 [exp] 106 / 3e-23 AT5G16270 327 / 2e-101 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Lus10037478 [exp] 101 / 8e-22 AT3G59550 315 / 4e-97 SISTER CHROMATID COHESION 1 PROTEIN 3, Rad21/Rec8-like family protein (.1) Lus10020235 [exp] 96 / 7e-20 AT5G16270 371 / 4e-110 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Lus10020233 [exp] 65 / 2e-10 AT5G16270 308 / 7e-91 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G067400 [exp] 274 / 2e-79 AT5G40840 218 / 6e-60 Sister chromatid cohesion 1 \(SCC1\) protein homolog 2, Rad21/Rec8-like family protein (.1.2.3) Potri.010G178600 [exp] 117 / 1e-26 AT5G16270 417 / 2e-127 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Potri.008G078500 [exp] 115 / 4e-26 AT5G16270 407 / 2e-123 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Potri.001G225600 [exp] 113 / 2e-25 AT3G59550 402 / 5e-130 SISTER CHROMATID COHESION 1 PROTEIN 3, Rad21/Rec8-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04825 [flax] [poplar] Rad21_Rec8_N N terminus of Rad21 / Rec8 like protein CL0157 [flax] [poplar] Kleisin PF04824 [flax] [poplar] Rad21_Rec8 Conserved region of Rad21 / Rec8 like protein
Representative CDS sequence Show only first row Show all	>Lus10041587 pacid=23146958 polypeptide=Lus10041587 locus=Lus10041587.g ID=Lus10041587.BGIv1.0 annot-version=v1.0 ATGTTTCACTCGCAATGCTTCCTTTCCCGTAAAGGCCCACTGCGTTCAGTTTGGGTGGCTGCTTACTGCTTCAACAAGCTCAAGAAATCCCAAGTCACTG ACACTGACATCTCCTCCTCTGTTGACAAAGTCTTGAAAGATGAGTTTGATGCCGTTGCGTATAGAGTGTTGGCCTACTTTCTCCTGGGGATTGTCAGGAT ATACTCCAAGAAGGTTGAGTACCTGTTCAGTGACTGCAACAAGGTGCTTGTTGAAGTCAAGGATTTTGCTGTCAGTACTATATTTACTGCCGACACCTTG CTTGTTCCGTTTTCTGCTCCACATTTCACCATTACTCTTCCTAAAAGCTTCCAACTTGACGCTTTTGACTTGGGGATACTGGAAGATGCTAGTGGGTGTA ATGTGCTGCCTCTAGAAGATATCACGCTTAGAGGTATATCCCTTTCTTGCCTTTCTGTTTTATGTTTCCAGCAGCTTAGCTTTTTAAGTCCTTTTGAAAC AGATGTTACGAGGAGGCATGCTGGATCTGAGAGCCTCATTCTTGACAAGTTTCATAGCATGGATGTTCCTTGCCAGGATAGAGGTCCTACAGGAAACTAT CTGAATGACATGTTGGCAATTGAGTATCGACCAGGTACATCAAGTATTGAAGAGAATTTGGAAGCATCTTTAGCAACTAACGATAACTGTCACCAAGATT CTGTTGAGCGTGAAATGTTGTTATGGGTTCAGGAAGAGCCTCCAGAGATTGGAACGTCATATTCACGGGTATGTCAACCAGAAGATAGTGCAGACTCCAA TGAATTGTGTATGCAGAAGGTATGGGATGACGGCTACTGTGAAGCATTATCCCTGAATGTTGACATGTTTCTTGGAATTCAGACAAAGCATCTGAACATT GTTGAGCCTCCTGAGGCACAAGCCGATGCACATCATGGTGATCGAAGTGAAACAGAATTAATTACAGAGGAATTTCAAGACACTACATGCTTGCAGGACC AACCTATGGATTATGAAATGTGTCCTAGTGTTGAGAAGCCCCTCGAACATTTTGATTCAGAGCATAAGGATGATGCAGAACCGGTAGACTCGTTGCATGC AACATCAGCAAACTGTCTGAAGCGGAAGTTTGGACTAGTATATCAGAGGAGAGCAAAGAAAGCAATTGTTTTAGATGCCGCAGGGCCGATAGAGACTACT ATTCAGATGTATCAGCCAACTGAGGGTGACTGCGATTCAGGCCATGTAGAAGCTAGCACAGAGAAACTGCTGGACTCTAGATTGTATAAGGAAAAAATTA TGCAGCTGGAAACATTGAGCCCAGTTGGTGGACGCCCTGAATGTGCTACCTCATGTGAGAATCATAGAGAAGCCGAACCCATCAAGTCGGTAGTCTCAAC TCCATCCGGAAATGCTAAGTACCGATTGTCCAGAGATGATTGTACTCTCTCAGTTACGGTTGAAAGTACTCCTGAATCCAAATTTACGAATACTTCAGGA ATTAATACGACACCAGAGTTCTTTGTTCTTCCTACTCCAGCTGCTAAGGATACTGTTCCGACTCATAGGAGAAGAAAATGCATCTTCGATAATATTATTG TGCTTCCTAATGACTTAATTAAGCGAAATGTAGAGGATCCCAGTGAGTTGGTTACTAAAAGAAGAAAGATCCCTCGAACTGCTCTTGATTCCTGGAGGGC TTATCGACTTTCCGATCTCCATCAGTGTCTTATGGAACCCTTGATTCCTTGTTCGGCATTGGGGACCACATGCCTCCCCTCTAAAAGGAGATCGAAGATT TCAGAAACTAAAAAAACTGGGGAGACTCGGGGAAAGAATGTATCAAGATATTTTATTGGCCAGTCTACTACTGAAACTGTGGAACCTACAGACAAGTCAG AGATGTTAGATACTCAAAATGGAGATAGATCAGTTCGAACACCTGTTGAAGGTGTTGAATCTGTGGACAACTTGGGTGATTTGATTCATCCAGTTGTTGA TGAAGCAACTGAAATAGAACCACAGGCAGAGTCAGATGGCCATGCACCTGAAAATGCTAGCAAAACTTCTGAGCAGTCAGTGATTGCTCCTGGAACACCA GTTCGTCTATCGATTCAAACAATGAACCCTCCAACAAAACAGAATACACCAGAGGTGGGATATGTCTCAGAGCATACTACAATTGCTCCTGAAACACCGA TGCAGTACACAGGAATAATGAGATCTTATGGGAGCCCCGAGAGACCTGACAGTGGCAACTCAGATTTGGTTGGGCAAGGATTTGGCCGAAAGAAGGGTCA AGAAATTGATTTCAATTCCATGGATGAGGATATGAGGGCTGAAGATGAAGTCCAGAACATGTATGGATGGTCAGAGAGTACCGGGTACGATGAGATGAAA GGGATGGTAGCAAGGTTCTTGCAGAATAGTTTTCAAGAGAAGCTCCGAAACGGAGAGGATGAAGCCGTAAACTTGCTGCAACTTCTGGAAGGAAGGACCA AGAAAGAGAGCGCAAGGGTTTTCTACGAGATATTGGTGATGAAGAGTAAAGGGCATGTGGATGTGAAGCAAGAAAGTGGATACGGAGAAGTTGTTGTGCA GAAGGCTTCTCAATGGAGTTGTGATGAGTGA
AA sequence Show only first row Show all	>Lus10041587 pacid=23146958 polypeptide=Lus10041587 locus=Lus10041587.g ID=Lus10041587.BGIv1.0 annot-version=v1.0 MFHSQCFLSRKGPLRSVWVAAYCFNKLKKSQVTDTDISSSVDKVLKDEFDAVAYRVLAYFLLGIVRIYSKKVEYLFSDCNKVLVEVKDFAVSTIFTADTL LVPFSAPHFTITLPKSFQLDAFDLGILEDASGCNVLPLEDITLRGISLSCLSVLCFQQLSFLSPFETDVTRRHAGSESLILDKFHSMDVPCQDRGPTGNY LNDMLAIEYRPGTSSIEENLEASLATNDNCHQDSVEREMLLWVQEEPPEIGTSYSRVCQPEDSADSNELCMQKVWDDGYCEALSLNVDMFLGIQTKHLNI VEPPEAQADAHHGDRSETELITEEFQDTTCLQDQPMDYEMCPSVEKPLEHFDSEHKDDAEPVDSLHATSANCLKRKFGLVYQRRAKKAIVLDAAGPIETT IQMYQPTEGDCDSGHVEASTEKLLDSRLYKEKIMQLETLSPVGGRPECATSCENHREAEPIKSVVSTPSGNAKYRLSRDDCTLSVTVESTPESKFTNTSG INTTPEFFVLPTPAAKDTVPTHRRRKCIFDNIIVLPNDLIKRNVEDPSELVTKRRKIPRTALDSWRAYRLSDLHQCLMEPLIPCSALGTTCLPSKRRSKI SETKKTGETRGKNVSRYFIGQSTTETVEPTDKSEMLDTQNGDRSVRTPVEGVESVDNLGDLIHPVVDEATEIEPQAESDGHAPENASKTSEQSVIAPGTP VRLSIQTMNPPTKQNTPEVGYVSEHTTIAPETPMQYTGIMRSYGSPERPDSGNSDLVGQGFGRKKGQEIDFNSMDEDMRAEDEVQNMYGWSESTGYDEMK GMVARFLQNSFQEKLRNGEDEAVNLLQLLEGRTKKESARVFYEILVMKSKGHVDVKQESGYGEVVVQKASQWSCDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40840		SYN2, ATRAD21.1	Sister chromatid cohesion 1 \(...		Lus10041587 [exp]	0	1
AT5G63960		EMB2780	DNA binding;nucleotide binding...		Lus10033513 [exp]	2.0	0.9566
AT4G00980			zinc knuckle (CCHC-type) famil...		Lus10003998 [exp]	2.2	0.9499
AT2G04235			unknown protein		Lus10016054 [exp]	2.2	0.9680
AT1G10180			unknown protein		Lus10040609 [exp]	3.9	0.9355
AT3G10180			P-loop containing nucleoside t...		Lus10012103 [exp]	4.2	0.9562
AT2G33340		MAC3B	MOS4-associated complex 3B (....		Lus10023728 [exp]	4.6	0.9446
AT3G62300		ATDUF7	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10002437 [exp]	5.1	0.9362
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10005023 [exp]	5.5	0.9492
AT1G07970			unknown protein		Lus10023345 [exp]	5.5	0.9421
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10019042 [exp]	7.4	0.9395

Compare expression of checked genes

Lus10041587 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.