Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14230 934 / 0 unknown protein AT5G13530 71 / 2e-12 KEG KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) AT5G57740 58 / 2e-08 XBAT32 XB3 ortholog 2 in Arabidopsis thaliana (.1) AT2G14255 56 / 6e-08 Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT2G25600 55 / 2e-07 AKT6, SPIK Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) AT5G02620 55 / 2e-07 ATANK1, ANK1 ankyrin-like1 (.1) AT2G03430 53 / 2e-07 Ankyrin repeat family protein (.1) AT3G04710 54 / 3e-07 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT5G20350 54 / 5e-07 TIP1 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT5G07840 51 / 5e-07 PIA1 phytochrome interacting ankyrin-repeat protein 1, Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022339 [exp] 1395 / 0 AT5G14230 974 / 0.0 unknown protein Lus10015811 [exp] 757 / 0 AT5G14230 727 / 0.0 unknown protein Lus10036990 [exp] 538 / 0 AT5G14230 510 / 5e-174 unknown protein Lus10036989 [exp] 241 / 2e-74 AT5G14230 224 / 2e-68 unknown protein Lus10007432 [exp] 66 / 3e-11 AT2G31800 69 / 3e-13 Integrin-linked protein kinase family (.1) Lus10024844 [exp] 65 / 2e-10 AT1G34050 353 / 4e-114 Ankyrin repeat family protein (.1) Lus10020272 [exp] 64 / 3e-10 AT5G13530 97 / 9e-21 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10014522 [exp] 63 / 3e-10 AT5G40160 322 / 3e-109 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) Lus10002621 [exp] 62 / 9e-10 AT5G13530 99 / 6e-22 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G333600 [exp] 1061 / 0 AT5G14230 975 / 0.0 unknown protein Potri.010G057300 [exp] 904 / 0 AT5G14230 843 / 0.0 unknown protein Potri.011G151300 [exp] 595 / 0 AT5G14230 568 / 0.0 unknown protein Potri.013G062000 [exp] 79 / 7e-15 AT2G03430 94 / 2e-21 Ankyrin repeat family protein (.1) Potri.001G029600 [exp] 71 / 2e-12 AT5G13530 2587 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Potri.010G185200 [exp] 67 / 2e-11 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) Potri.013G042300 [exp] 64 / 1e-10 AT3G04710 619 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.006G061800 [exp] 63 / 7e-10 AT5G20350 959 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Potri.001G274900 [exp] 63 / 7e-10 AT5G13530 1856 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Potri.018G121200 [exp] 61 / 2e-09 AT5G20350 951 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10041588 pacid=23147063 polypeptide=Lus10041588 locus=Lus10041588.g ID=Lus10041588.BGIv1.0 annot-version=v1.0 ATGACGGTGTTCTCCGGCAAACAAGTGGTCCCGGTGAACTATGAGGCCGAGGTGTCGCAACAGCTACTGGAAGCTTGTCTCTCCGGCGATCTCAGATCCG CTCTTGACTGCATTTCCGATCCTTGTCTCGATGTCAACTTCGTCGGAGCTGTCTGCTTGAAGTCCAGGAGGAGCGAGGTCGTACTGCGCGATGAATCGGC TGGGGAAGTTCGGGTGGAGTACGAGGAGTTCAAGACCGACGTCACCGCTCTCTTTCTCGCCGTTCACTCCGGGAATGTGGATCTCGTCAGGAATTTGCTG AGCATTGGAGCTGATGTAAACCAGAAACTCTTCAGGGGTTTCGCGACAACTGCAGCAGTAAGAGAGGGCCACCTTGAGATTCTAGAGATCTTACTTAAAG CTGGCGCTTCTCAGCCGGCTTGCGAAGAGGCTTTATTGGAAGCAAGCTGTCATGGGCGGGCAAGGGGAACTGAAGTATTAATGGGGTCTGATCTCATTCG GCCCCATGTTGCTGTTCATGCTCTTGTCACCGCATCCTGCAGAGGATTCGCGGATGTAGTCGACACTCTTATGAAGTGTGGTGTTAACTTCAACGCCACC GACAGATTGCTACTGTTGTCGTCTAAACCTTCTCTCCATGCTAATGTTGACTGCTCTGCACTTGTTGCTGCTATTGTAACTAGGCAGGTTGATGTGGTCC GTATGCTACTGAAGGCCGGTGCGAAGAACGATGTTAATGTAAGATTAGGAGCATGGTCATGGGACACAACTACAGGAGAGGAGTTCCGAGTTGGTGCAGG ATTAGCTGATCCCTATGGTATCACTTGGTGCGCTGTGGAGTATTTTGAAGCTACCGGCACTGTTTTAAGAATGCTCCTGCAACATTACTTCTCTCCCAAT AATACTCACCTCGGAAGAACATTGCTGCACCATGCAATTCTCTGCGGAAACGAAGGTGCTGTCAAAGTGCTTTTAGGTTGCGGTGCTGATGTAGAGGCCC AAGTCAAAACACTCAAGACTGTGTTCAGACCAATTCACTTGGCCGCTCGTTTGGCATTACCAGCAGTACTTAACCTCCTTATCCAATCAAGCTGTGATCT GAACTCCAGGACAGATTCTGGGGACACAGCTTTAATGATCTGTGCAAAGTACAGGCATGAGGAGTGTCTAAAGGTGTTAGCCATGGCTGGTGCTGATTTC GGCCTGGTCAACAATGCCGGCCAATCTGCACTTTCGATTGCTGCTACAAACCGATGGTTCCTCGGGTTTCAGCAAGCTGTACTTGAAACAATCAAGTCCG GAAATGTTCCTGTTTCCAGGAATGTTTTCATATTCTGCCCTCTCTTCTTTGTATCCCAAGCTGGTGACGCAGAGGCACTGCAAGTATTGATCAAGTCAAC CAGCAGGGAAGAAGTAGTTGACCTCGATTACCAAGATGAAAATGGATACTCTTCAGTGATGTTCGCAGCATTACACGGTCGTGTCGAAGCATTCAGGTTG CTGGTCCAGGCAGGGGCTGACGTAAAGCTGCAGAACAAATCCGGCGAAACTGCAATATCCTTATCCGAACTGAACCAGAACCGTGACCTTTTCGAGAAGG TAATGCTGGAACACGCTTTGGAAAAGGGGAACCGGTCAGCCAGAGGGTTCTACGCTTTGCACTGCGCAGCACGCCACGGAGACATAGTTGCAGCCAAGTT GCTTATAACCAGTAAAGGCTACGACGTGAACGTTCCCGACGGAGATGGCTACACTCCTTTAATGTTAGCAGCTAAGGGAGGCCACAAGGCGATGTGCCAA TTCCTGATCGTATCGTGCAGTGCAGATTGCGAGTGGAAGAATTCCAGAGGGGAGACTGCAGTTTCTCTGGCTAGAGGAGGAGGAGTGGAAGATGTGATTC TGGACGAGCTTGCTAGGAAGCTGGTGGTGAGGGGGTGTTATGTAAAGAAGCATACTAAGAGCGGCGGAGGTGTGGTTCATGGGAAGGATATGAGAATGGT TGCGGGGGAGGGAGTTTTGTCGTGGGGGAAGAGCAGTAGAAGGAATGTGATTTGTCGAGATGCGGAGGTGGGAGGGAGTGGGGAGTTTAGGAAGAAGAGG GAGAGGAAAGGGAGAGATGGTGAGGAATCGGGTTTGTTTCGGGTGAGGACGACGAAGAACAGAGAGGTGCATTTTGTGTGTGATGGAGGGAGGGAAATGG CTGAGCTTTGGGTTAGAGGTATAAAGCTTGTTACAAGAGATGTTATCTGTTGTTGA
AA sequence Show only first row Show all	>Lus10041588 pacid=23147063 polypeptide=Lus10041588 locus=Lus10041588.g ID=Lus10041588.BGIv1.0 annot-version=v1.0 MTVFSGKQVVPVNYEAEVSQQLLEACLSGDLRSALDCISDPCLDVNFVGAVCLKSRRSEVVLRDESAGEVRVEYEEFKTDVTALFLAVHSGNVDLVRNLL SIGADVNQKLFRGFATTAAVREGHLEILEILLKAGASQPACEEALLEASCHGRARGTEVLMGSDLIRPHVAVHALVTASCRGFADVVDTLMKCGVNFNAT DRLLLLSSKPSLHANVDCSALVAAIVTRQVDVVRMLLKAGAKNDVNVRLGAWSWDTTTGEEFRVGAGLADPYGITWCAVEYFEATGTVLRMLLQHYFSPN NTHLGRTLLHHAILCGNEGAVKVLLGCGADVEAQVKTLKTVFRPIHLAARLALPAVLNLLIQSSCDLNSRTDSGDTALMICAKYRHEECLKVLAMAGADF GLVNNAGQSALSIAATNRWFLGFQQAVLETIKSGNVPVSRNVFIFCPLFFVSQAGDAEALQVLIKSTSREEVVDLDYQDENGYSSVMFAALHGRVEAFRL LVQAGADVKLQNKSGETAISLSELNQNRDLFEKVMLEHALEKGNRSARGFYALHCAARHGDIVAAKLLITSKGYDVNVPDGDGYTPLMLAAKGGHKAMCQ FLIVSCSADCEWKNSRGETAVSLARGGGVEDVILDELARKLVVRGCYVKKHTKSGGGVVHGKDMRMVAGEGVLSWGKSSRRNVICRDAEVGGSGEFRKKR ERKGRDGEESGLFRVRTTKNREVHFVCDGGREMAELWVRGIKLVTRDVICC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14230			unknown protein		Lus10041588 [exp]	0	1
AT5G14230			unknown protein		Lus10022339 [exp]	1.0	0.9054
AT4G13710			Pectin lyase-like superfamily ...		Lus10042509 [exp]	2.4	0.7696
AT1G04520		PDLP2	plasmodesmata-located protein ...		Lus10023726 [exp]	14.9	0.7611
AT4G37450		ATAGP18, AGP18	arabinogalactan protein 18 (....		Lus10011520 [exp]	17.2	0.7264
					Lus10042511 [exp]	18.2	0.7168
AT5G56510		APUM12	pumilio 12 (.1)		Lus10018710 [exp]	18.5	0.6663
AT1G06850	bZIP	ATBZIP52	basic leucine-zipper 52 (.1.2)		Lus10024204 [exp]	33.8	0.7082
AT1G50460		ATHKL1, HKL1	hexokinase-like 1 (.1)		Lus10019038 [exp]	34.6	0.6859
AT3G10430			F-box and associated interacti...		Lus10007847 [exp]	34.9	0.6823
					Lus10035120 [exp]	43.0	0.7054

Compare expression of checked genes

Lus10041588 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.