Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14210 501 / 5e-169 Leucine-rich repeat protein kinase family protein (.1) AT5G63410 326 / 9e-103 Leucine-rich repeat protein kinase family protein (.1) AT3G03770 289 / 2e-87 Leucine-rich repeat protein kinase family protein (.1.2) AT1G14390 242 / 2e-70 Leucine-rich repeat protein kinase family protein (.1) AT5G07280 164 / 2e-42 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G44700 154 / 6e-39 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT5G53890 150 / 1e-37 AtPSKR2 phytosylfokine-alpha receptor 2 (.1) AT4G20140 147 / 1e-36 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT2G02220 137 / 1e-33 ATPSKR1 phytosulfokin receptor 1 (.1) AT2G02780 134 / 1e-32 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022340 [exp] 797 / 0 AT5G14210 876 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032058 [exp] 684 / 0 AT5G14210 873 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035225 [exp] 676 / 0 AT5G14210 854 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032059 [exp] 665 / 0 AT5G14210 870 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10029659 [exp] 395 / 6e-130 AT5G63410 584 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10020303 [exp] 288 / 2e-87 AT3G03770 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10033407 [exp] 286 / 1e-86 AT3G03770 666 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034873 [exp] 283 / 2e-85 AT3G03770 668 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10005689 [exp] 280 / 4e-84 AT3G03770 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G333300 [exp] 631 / 0 AT5G14210 854 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G095600 [exp] 516 / 6e-175 AT5G14210 720 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G093100 [exp] 495 / 6e-167 AT5G14210 681 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G039000 [exp] 314 / 4e-97 AT3G03770 933 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G064300 [exp] 311 / 9e-96 AT3G03770 896 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G147700 [exp] 301 / 1e-92 AT1G14390 675 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G014300 [exp] 292 / 6e-89 AT3G03770 692 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G398500 [exp] 150 / 6e-38 AT5G53890 1268 / 0.0 phytosylfokine-alpha receptor 2 (.1) Potri.012G139000 [exp] 143 / 3e-35 AT5G07280 1377 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G116900 [exp] 139 / 3e-34 AT5G53890 1279 / 0.0 phytosylfokine-alpha receptor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10041589 pacid=23146660 polypeptide=Lus10041589 locus=Lus10041589.g ID=Lus10041589.BGIv1.0 annot-version=v1.0 ATGCCGAGCTTACTACTAAACTGTTCTTTTATGTTATTCCTTTCCTGGGCTTCCTTCCTTGTCCCACTCTCCCACCAGCTACAACCCTCCCAGACTCAGC TCCTAATGCAACTCAGGAAGCAATTGGAGTACCCTCCACTCTTGAATGTATGGGAAGAAAGCTACACCAGTAATGCTGACCTCTGCAACTTGCCATCCAC CCCACACTTGACCCTCGTCTGTCACAATAATCTGATCACAGAGCTCAAGATTATGGGAGACACCAACAACAAGAAGCTTCTCAAGCTTTCGAGAATGGTC AAGCTGAATTCTTTGGTTCTTGATGCCAACTACTTCAATGGAACTGTCCCTGATTGGTTTGATTCGTTATCAAACCTCACCATTTTGAGCTTGAAGAACA ACTCTTTTGAAGGTCAGTTTCCTACTTCAATTTGCAGAATCAGAACCTTAACAGCTATTGCACTGTCCCACAATCGACTGACTGGTAAACTGCCTGATTT GGAGGACTTGACTAATCTGCGTGTACTGGACTTGAGAGACAACAGATTGGAATCCGAGTTGCCTCTCATGCCAAAAGGGGTGGTTCATGTTCTGTTGAGC AATAACTCGTTTTCAGGTGAAGTTCCAGCCCAGTTTGGACGGCTGAGTCAGCTGCAACACCTGGATTTGTCGTTAAATAACCTCAAAGGAACGCCTCCTT CTTTGTTCTCTTTGCCAAGCATCAGTTATCTAAATTTGGCTGCAAATATGCTAAGTGGGTCGCTTCCTGTCCATCTCAGCTGTGGTTCCAAGCTTGGTTT CGTTGATGTATCCACGAACAAGTTATTTGGTGGAATCCCAGCTTGTTTAGAGAGTAATTCAAGTAAGAGAGTGGTTAAATCTGGTGGGAATTGTTTATCC ATTGATTCACCAAATCAGCATCAGGAATCTGATTGCAAAGAGGCCACAATGGACGACGCCAAAGGGTCAAGGTTTAGAGCAGCAGGGATACCTGTTGCTG TCATTGGAGGAGCTCTAGTTTTTATAGGGCTCTTAGCATTTGGAGTTCTCTTTATTTACAGAACATGTCGTCCTCGAAAAACACTTGAGAATAATATAGT TTCCAAGTTTGTGCAAGGTGATGATCATCTACCACCTACTGATGTTTTCTCTGAAGTCCTGGCGAATGAAACCAAGCTAGTGAGACAAGGTACTCCGGCA TGCCATGTATTTCCGTTGGAGGAACTGAAGGAAGCCACAAGCCACTTCAATTCCTATTCATCCTTTATGGTTGAAGGCTCTATCGGGAAGGTTTACAAAG GTAGATTGAAGAATGGAACCCTTGTGGTCATACGGTCCGTGACTTTGCTCAAGAAACAAACAATCCAAAACCTTAAAGTGAGACTTGACTTGCTCTCAAA GCTTCATCATCCACATTTGGTTAGTTTGTTGGGTCACTGCATTTACAGCAGTGGACAAGACGATAGCAACAAGGTCTTCCTTGTCTATGAATATGTGCCG AATGGAAACTATCGTTCCTATTTATCAGAACACGTTGGTCAGAAGGCGCTAATTGGTGTTGCCAAGGCTGTTCAGTTCCTACATGCTGGTATGATTCCAG GCACATTCCATAACCGATTAAAGACGAACAACATATTGCTTGATGAGCACAAGATTGCAAAGCTAAGTGACTACGGCCTGCCCATCATCACTGAAGACTT TGACAAACTCGAGGCATCTTTTGGGAGCCAAGACGGGAGAAGAAGGGTTGTGGATCCAATTGTGCTAACCACATGCTCACAGGAGTCACTGTCAATGGTG GTGTCGATCACAAGCAAATGCATATGTCCAGAACCGTCAGAAAGTTCAAGCCACAGCTGA
AA sequence Show only first row Show all	>Lus10041589 pacid=23146660 polypeptide=Lus10041589 locus=Lus10041589.g ID=Lus10041589.BGIv1.0 annot-version=v1.0 MPSLLLNCSFMLFLSWASFLVPLSHQLQPSQTQLLMQLRKQLEYPPLLNVWEESYTSNADLCNLPSTPHLTLVCHNNLITELKIMGDTNNKKLLKLSRMV KLNSLVLDANYFNGTVPDWFDSLSNLTILSLKNNSFEGQFPTSICRIRTLTAIALSHNRLTGKLPDLEDLTNLRVLDLRDNRLESELPLMPKGVVHVLLS NNSFSGEVPAQFGRLSQLQHLDLSLNNLKGTPPSLFSLPSISYLNLAANMLSGSLPVHLSCGSKLGFVDVSTNKLFGGIPACLESNSSKRVVKSGGNCLS IDSPNQHQESDCKEATMDDAKGSRFRAAGIPVAVIGGALVFIGLLAFGVLFIYRTCRPRKTLENNIVSKFVQGDDHLPPTDVFSEVLANETKLVRQGTPA CHVFPLEELKEATSHFNSYSSFMVEGSIGKVYKGRLKNGTLVVIRSVTLLKKQTIQNLKVRLDLLSKLHHPHLVSLLGHCIYSSGQDDSNKVFLVYEYVP NGNYRSYLSEHVGQKALIGVAKAVQFLHAGMIPGTFHNRLKTNNILLDEHKIAKLSDYGLPIITEDFDKLEASFGSQDGRRRVVDPIVLTTCSQESLSMV VSITSKCICPEPSESSSHS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14210			Leucine-rich repeat protein ki...		Lus10041589 [exp]	0	1
AT2G40316			unknown protein		Lus10017429 [exp]	4.5	0.6975
AT4G15200		AFH3	formin 3 (.1.2)		Lus10031585 [exp]	5.5	0.6083
					Lus10032831 [exp]	13.1	0.6311
AT5G59900			Pentatricopeptide repeat (PPR)...		Lus10010407 [exp]	16.9	0.6004
AT1G06260			Cysteine proteinases superfami...		Lus10041788 [exp]	22.3	0.6043
AT4G10650			P-loop containing nucleoside t...		Lus10006578 [exp]	28.8	0.5952
					Lus10036680 [exp]	33.2	0.6124
AT2G17270		PHT3;3	phosphate transporter 3;3 (.1)		Lus10013839 [exp]	40.1	0.6054
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10003769 [exp]	44.2	0.5728
AT1G07480			Transcription factor IIA, alph...		Lus10004981 [exp]	44.8	0.5813

Compare expression of checked genes

Lus10041589 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.