Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01810 549 / 1e-180 unknown protein AT2G42320 447 / 1e-144 nucleolar protein gar2-related (.1.2) AT5G43230 448 / 5e-143 unknown protein AT3G57780 422 / 4e-135 unknown protein AT5G06930 367 / 2e-113 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022341 [exp] 1760 / 0 AT3G01810 605 / 0.0 unknown protein Lus10037001 [exp] 511 / 2e-164 AT3G01810 583 / 0.0 unknown protein Lus10040502 [exp] 461 / 5e-149 AT2G42320 685 / 0.0 nucleolar protein gar2-related (.1.2) Lus10011304 [exp] 451 / 4e-145 AT2G42320 688 / 0.0 nucleolar protein gar2-related (.1.2) Lus10015804 [exp] 331 / 3e-105 AT5G43230 371 / 2e-122 unknown protein Lus10015805 [exp] 134 / 2e-32 AT3G01810 160 / 5e-41 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G333200 [exp] 1045 / 0 AT3G01810 652 / 0.0 unknown protein Potri.010G057700 [exp] 515 / 9e-169 AT5G43230 560 / 0.0 unknown protein Potri.008G177500 [exp] 505 / 2e-162 AT5G43230 565 / 0.0 unknown protein Potri.016G051500 [exp] 473 / 9e-153 AT2G42320 645 / 0.0 nucleolar protein gar2-related (.1.2) Potri.006G056800 [exp] 459 / 8e-148 AT2G42320 618 / 0.0 nucleolar protein gar2-related (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041590 pacid=23147011 polypeptide=Lus10041590 locus=Lus10041590.g ID=Lus10041590.BGIv1.0 annot-version=v1.0 ATGGTTCATCTAAATGCAAAGAACAAGAATAAGGCCTCAGTGCAGTTAAGTTACTTAATCCACATTGAAGAGATCAAGCCTTGGCCACCATCCCAATCTC TGAGGTCCCTTCGATCAGTCATGATTCTGTGGGAAAATGGTGGCCGGCATTCTGGTTCTACCAATGCAGTTGTTCCGACGCTTGGGACCGTAGTTGGTGA TGGGAAAATCGAGTTTAACGAGTCTTTTAGATTACCAGTGACTTTGCACAAATCATCCAAAGGCAGAGATGGTGAAGTTTTTCAGAAGAATAACTTAGTG TTCAACTTGTGCGAACCTAGGAGAGATAAGGCTCAATTGCTTGCTACAGCTGTAATAGACCTGGCAGATTATGGTGTTCTCAAGGAGACGATAAGCGCTA CAGCTCCAATGAAAAGCACTAGGAGCTTTACAAACACTTCTCATCCTATTTTGTTCATTAAGATCCAGCCAGTTCCAAAGGGTCATCGCGGATCTAAGGT GGTGGACGGAGGCTTATCACGAGGTGCATCGTTGGATAAGAGTGCTAGTGATTCAGTGTCGGTATTGATGAATGAAGAATATGCTGAGGAAGCCGAGCTT GGTTCTTTCACTGATGATGACGTTTCCTCTCAATGCTCCTTCATCAACGGGGGATTCCCTGCTTTTGAAAAGAATGTACCAGATCGAAGGACACATAGTA ATGGAGGGGCTTCTGAGGAACGTGCAAATGCTTCACAACCTATGCATGATAAAATTAAGAATTCTCAAGAATATGTCAAGGGCAATTCATCTCCTTCATC CTCTGTAGATCTATCTTCTAGTCCAGGCAGTCCAATAAATGGTCATGCTTTTCTGATGAAATCTCCTGATTCCGGTTCAGTCTTAAATGTGAGAAGTGAA CAAAGCCTTCAGCCAACTTCATCTAGCGTTACATATGATGAAGTTGAGGAATATGGTGAAAGTCGAAGCAATAACAAGAGAGATGTGGAGCACATTGATG GCGTGGAATGTGAAATAACTGAGAGCTTTGTGGTGAATAGAGAGCCTGTCATAGCCAAGGATGAGAACTCCACTTCTGTGAAAGAAGTGAATGGCGGAGA ATACCAAAAGATTGAACAAGTCAGTAAAAGTATAGATGAAACAACGGATTCCTCCAAGGAAGATCCTGCTAGCTCATCTTTTCTTCAAGATACTGCTAAC AAAGGAGCGTCACTTGGCGGCGAAGACACTGAAATGAAGGGAAATATTATGAAATCTGATAGACTAAAGCATGTAAAATCTGTTAGGTCGATGTCAGACT CGTTCCGGAGCAATGGAGGTGTTAGCATAAGTCACCATGAACCGAAAGAAGTCAATGTGTGGGGTGATCAACAGAGCAGCGCTGGAAGCATTAGAGCTGG TGAAGGGAGAAGTGCCAAGATTCATCCCAAGGACGGCAGCACAATTTTAGATGGAATGTTCCAGCAACTGGCCCACAAAGTTAAGATGCTTGAAGGAGAG TTGAGAGAAGCTGCTGCCATTGAGACTGCACTTTACTCTGTTGTTGCTGAGCATGGAAGTTCCATTAGTAAGGTGCATGCACCGGCTAGGCGCCTCTCGA GAATGTATCTTCATCTGTCTGGAGAAGATTCCTACTCAAGCAGAGCCAGTGCCGCTAGAAGTGCTGTATCGGGGCTCATTTTAGTGGCAAAGTCATGTGG CAACGATGTCCCCAGATTGACATTTTGGTTGTCCAACTGTGTTGTGCTAAGAGCTATCATAAGCCATGCAGCCGGTGAGTCTCTGGAAAGTAAAGGTGAT CAAATGAGGAAATCCCTATTGAACTGGAAGGAATTATCTTCTAGCAGAAAAGAAAAGGGAAGTGGTAATTCTGGTGATTGGGAGAACCCACGTACATTTA TAACTGCACTGGAAAGAGTTGAAGCTTGGATCTTTTCTAAAACTGTTGAATCTATTTGGTGGCAGACTCTTACTCCACACATGCAATCTGCTGTCACAAA AGACATTGATGGAGTAATTGATTCGGACTCTAAGAAAACCCTTGGGAGAACCTCAAGTTCATGCGATCAAGTACAAGGAAACTTCTCCTTGGAGCTCTGG AAGAATGCATTCAAGGATGCCTGTGAAAGACTCTGTCCAGTTCGAGCGGGTGGACACGAGTGTGGTTGTTTGCCCGAGCTGGCAAGGCTGGTGATGGAGC AATGTGTGGCTCGATTAGATGTGGCAATGTTTAATGCGATACTCCGTGAATCTGCTGATGAAATCCCCACTGATCCAGTATCTGATCCCATTAGTGACCC AATGGTTCTCCCAATTCCAGCTGGGATATCAAGTTTTGGAGCTGGTGCACAGCTTAAAAATGCGATTGGGAACTGGTCAAGATGGCTGACCGACTTATTT GGGCTGGACGATGATGATGATGACCCCGGCGAGGGAAGCAGTGACCCTGATGAGGATGATCACAGACAAGATACTTCCTTCAAATCTTTTTATCTCCTTA ATGCACTGAGTGATCTTATGATGCTTCCCAAAGACTTGCTCTTAAGTAGAACTATAAGGAAAGAGGTGTGTCCTACATTTGGGACGCCATTGATCAAGAG GATTCTCTATAGTTTCGTCTCAGACGAGTTTTGCCCTGATCCTGTACCAAATGTCGTCCTTAAAGCGTTAGAGTCCGAGGACAACACGGTAGGAGAAGAC GGGTGTGTCACAACTGTACCATGCATCGCAGCTTCTCCAGTGTACATGCCTCCTTCATCACCTTCTGTGGCCGGCACAGTTGGAGTGTATGTGTCTGAAT CGCAACTCCGGAAAAGTAGGTCATCTGTGTTGAAAAAGTCATACACCAGTGACGACGAGCTTGATGAGCTGAAATCACCTCTGGCGTCAATATTCCCTGA TGGCTACCTTTCGTTGCCTGGAGCAATGAAGCCAGCATGGAAAATCAAAGAGGAAGGTCAAAACCCTGTCAGATACGACCTTCTTAAGGATATATGGAGA AACAGTTGA
AA sequence Show only first row Show all	>Lus10041590 pacid=23147011 polypeptide=Lus10041590 locus=Lus10041590.g ID=Lus10041590.BGIv1.0 annot-version=v1.0 MVHLNAKNKNKASVQLSYLIHIEEIKPWPPSQSLRSLRSVMILWENGGRHSGSTNAVVPTLGTVVGDGKIEFNESFRLPVTLHKSSKGRDGEVFQKNNLV FNLCEPRRDKAQLLATAVIDLADYGVLKETISATAPMKSTRSFTNTSHPILFIKIQPVPKGHRGSKVVDGGLSRGASLDKSASDSVSVLMNEEYAEEAEL GSFTDDDVSSQCSFINGGFPAFEKNVPDRRTHSNGGASEERANASQPMHDKIKNSQEYVKGNSSPSSSVDLSSSPGSPINGHAFLMKSPDSGSVLNVRSE QSLQPTSSSVTYDEVEEYGESRSNNKRDVEHIDGVECEITESFVVNREPVIAKDENSTSVKEVNGGEYQKIEQVSKSIDETTDSSKEDPASSSFLQDTAN KGASLGGEDTEMKGNIMKSDRLKHVKSVRSMSDSFRSNGGVSISHHEPKEVNVWGDQQSSAGSIRAGEGRSAKIHPKDGSTILDGMFQQLAHKVKMLEGE LREAAAIETALYSVVAEHGSSISKVHAPARRLSRMYLHLSGEDSYSSRASAARSAVSGLILVAKSCGNDVPRLTFWLSNCVVLRAIISHAAGESLESKGD QMRKSLLNWKELSSSRKEKGSGNSGDWENPRTFITALERVEAWIFSKTVESIWWQTLTPHMQSAVTKDIDGVIDSDSKKTLGRTSSSCDQVQGNFSLELW KNAFKDACERLCPVRAGGHECGCLPELARLVMEQCVARLDVAMFNAILRESADEIPTDPVSDPISDPMVLPIPAGISSFGAGAQLKNAIGNWSRWLTDLF GLDDDDDDPGEGSSDPDEDDHRQDTSFKSFYLLNALSDLMMLPKDLLLSRTIRKEVCPTFGTPLIKRILYSFVSDEFCPDPVPNVVLKALESEDNTVGED GCVTTVPCIAASPVYMPPSSPSVAGTVGVYVSESQLRKSRSSVLKKSYTSDDELDELKSPLASIFPDGYLSLPGAMKPAWKIKEEGQNPVRYDLLKDIWR NS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01810			unknown protein		Lus10041590 [exp]	0	1
AT4G35335			Nucleotide-sugar transporter f...		Lus10013845 [exp]	1.4	0.8828
AT3G20320		ABCI15, TGD2	ATP-binding cassette I15, trig...		Lus10019360 [exp]	2.8	0.8759
AT5G23130			Peptidoglycan-binding LysM dom...		Lus10013432 [exp]	2.8	0.8580
AT4G35335			Nucleotide-sugar transporter f...		Lus10026562 [exp]	3.0	0.8795
AT5G44370		PHT4;6	phosphate transporter 4;6 (.1)		Lus10026551 [exp]	4.0	0.8825
AT3G62660		GATL7	galacturonosyltransferase-like...		Lus10000262 [exp]	5.9	0.8596
AT1G04910			O-fucosyltransferase family pr...		Lus10032603 [exp]	6.0	0.8571
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10034560 [exp]	6.0	0.8497
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10041063 [exp]	8.4	0.8654
AT5G40610			NAD-dependent glycerol-3-phosp...		Lus10022308 [exp]	13.3	0.8343

Compare expression of checked genes

Lus10041590 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.