Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67150 298 / 2e-96 HXXXD-type acyl-transferase family protein (.1) AT3G50270 263 / 1e-82 HXXXD-type acyl-transferase family protein (.1) AT3G50280 261 / 6e-82 HXXXD-type acyl-transferase family protein (.1) AT3G50300 253 / 5e-79 HXXXD-type acyl-transferase family protein (.1) AT5G67160 235 / 3e-72 EPS1 ENHANCED PSEUDOMONAS SUSCEPTIBILTY 1, HXXXD-type acyl-transferase family protein (.1) AT5G38130 229 / 8e-70 HXXXD-type acyl-transferase family protein (.1) AT5G07860 204 / 5e-60 HXXXD-type acyl-transferase family protein (.1) AT5G07850 195 / 8e-57 HXXXD-type acyl-transferase family protein (.1) AT5G07870 194 / 2e-56 HXXXD-type acyl-transferase family protein (.1) AT5G01210 194 / 3e-56 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031148 [exp] 227 / 9e-69 AT5G67150 284 / 5e-91 HXXXD-type acyl-transferase family protein (.1) Lus10031149 [exp] 214 / 1e-63 AT3G50280 305 / 3e-99 HXXXD-type acyl-transferase family protein (.1) Lus10040222 [exp] 188 / 7e-54 AT2G39980 633 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10028267 [exp] 187 / 1e-53 AT2G39980 631 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10024809 [exp] 168 / 1e-46 AT5G42830 442 / 8e-153 HXXXD-type acyl-transferase family protein (.1) Lus10031725 [exp] 152 / 2e-41 AT3G50300 198 / 2e-59 HXXXD-type acyl-transferase family protein (.1) Lus10035519 [exp] 152 / 5e-41 AT5G01210 520 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10027500 [exp] 149 / 8e-40 AT5G23940 571 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) Lus10039256 [exp] 141 / 1e-36 AT5G23940 576 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G057100 [exp] 279 / 3e-89 AT3G50280 303 / 4e-99 HXXXD-type acyl-transferase family protein (.1) Potri.003G057001 [exp] 275 / 9e-88 AT5G67150 275 / 3e-88 HXXXD-type acyl-transferase family protein (.1) Potri.003G057200 [exp] 275 / 2e-87 AT5G67150 297 / 1e-96 HXXXD-type acyl-transferase family protein (.1) Potri.014G025500 [exp] 223 / 2e-67 AT5G42830 576 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025550 [exp] 217 / 4e-65 AT5G42830 579 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.016G112400 [exp] 204 / 6e-60 AT5G01210 614 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025600 [exp] 202 / 1e-59 AT5G42830 565 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.006G097500 [exp] 202 / 3e-59 AT5G01210 633 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.015G147300 [exp] 149 / 6e-40 AT5G23940 578 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) Potri.012G144500 [exp] 141 / 1e-36 AT5G23940 590 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10041591 pacid=23146692 polypeptide=Lus10041591 locus=Lus10041591.g ID=Lus10041591.BGIv1.0 annot-version=v1.0 ATGGCATATAACCGCTGTTCATCTGCAGCAGCAGCAGCAGCAGAGACACCCCCTCCAGTAACGGACAAAACTATTCACATAATTTCGACTTGCATTGTTG AACCAACAGAGATAGTGAGCAGTACCCACGAGAATGAAATCCACTTCACTCCATTCGACATCCAATTCCTTTCTCTTCAATATGCCCAAAGAGGACTCCT CTTCCCCAACCCTCCACATTCCTTACCAACCATACTTCCTCGCCTCATATCCTCCCTCTCTCGAGCTCTTTCTCTCTTCCCACCCTTCGCTGGCCGCCTC GCTGCTATCCAATACGACGACGGAACCGTCTCTTTCTCCGTCCACTCCAACTCCTCTTCTCGCGGTGCCCTTCTCGTCCACGCCGTTGCCCATGGACTCT CCTCTTCTGACGTTCTCTGCACTGGCTCTGCTGCTCCTCCAGGCAAAGTCCTTGACTCCCTCTTCTCCATGAACGGAGCTTATGGCTGTCAGGGAGTCTC CAATCCCCTGCTTGTGGTTCAATTCACTCAATTAATCGACGGAGTCTTCATGGGCATCACATTCTCTCACGCCGTCGCTGATGGATCATCTTTCTGGCAC TTCCTCAACACTTGGTCCCAAATTTCCAGGAATTCGGTTCCCGATTTGGGAAATCCGACTCCTGTAATTGGGCATTGGTTTCTGGACGGAATCATCCCTC CTATTCCATTCCCCTTCTCATTCCAGGAAACGATTTCTTGTTCCAAATCCCTAATTAATAGTAACACACCATCTCCTTTATTGCCTCTGCTCCAAAGGGT TTTCCACTTCAGTAAGGACAAAATCGCTCTACTCAAGGCCAAAGCAAACTCTGAGGCGCTAACCTTATCAACCACCACTATTAGTGTTAGAATAATCTCT TCATTGCAGTCGATCCTGGCTCACATATGGAGAGCCGTGATCAGAAACAGGCGAGGACTGGATCCTGACGAGGAAGTCCATTGCAAGCTGATGGTCGATT TCAGACAGAGACTGCAGCCGAAGCTGCCGCTGGCTTTCTTTGGGAATGCAGTGCTGTTTGGGACGGCGACGGCAACTGTCAGGGAGCTGTTGACGGAAGG AATCGGGTACGCTGGTCTGAGGTTAAACAAGACGGTGGAGAGGCAAATTGACGGAGAAGCAAGGCGGTGGTTGGAAGAGTGGATGGAAGAGAAGCCGGTG CTGCCGAAACTTGGTGCGATGGCGCGGAACTCGCTGATAGTGGTGGACTCGCCGAGGTTTAATGTGTACGGGAACGACTTCGGATGGGGAAAACCGGTTG GGGTCCGTGCTGCTGGGAATTGCAGTGACGGAAAGTTGACGGCGTTGGCTGGCAAGGAGGAAGGAAGTGTTGATCTTCAAGTTTGCTTGGTGGCGGACAC CATGAATGGGCTCGGGAATGATTTTGAGTTCATGGAGTTTGTTGGCTGA
AA sequence Show only first row Show all	>Lus10041591 pacid=23146692 polypeptide=Lus10041591 locus=Lus10041591.g ID=Lus10041591.BGIv1.0 annot-version=v1.0 MAYNRCSSAAAAAAETPPPVTDKTIHIISTCIVEPTEIVSSTHENEIHFTPFDIQFLSLQYAQRGLLFPNPPHSLPTILPRLISSLSRALSLFPPFAGRL AAIQYDDGTVSFSVHSNSSSRGALLVHAVAHGLSSSDVLCTGSAAPPGKVLDSLFSMNGAYGCQGVSNPLLVVQFTQLIDGVFMGITFSHAVADGSSFWH FLNTWSQISRNSVPDLGNPTPVIGHWFLDGIIPPIPFPFSFQETISCSKSLINSNTPSPLLPLLQRVFHFSKDKIALLKAKANSEALTLSTTTISVRIIS SLQSILAHIWRAVIRNRRGLDPDEEVHCKLMVDFRQRLQPKLPLAFFGNAVLFGTATATVRELLTEGIGYAGLRLNKTVERQIDGEARRWLEEWMEEKPV LPKLGAMARNSLIVVDSPRFNVYGNDFGWGKPVGVRAAGNCSDGKLTALAGKEEGSVDLQVCLVADTMNGLGNDFEFMEFVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67150			HXXXD-type acyl-transferase fa...		Lus10041591 [exp]	0	1
AT5G46760	bHLH	bHLH005, ATR2, ...	Basic helix-loop-helix (bHLH) ...		Lus10035365 [exp]	3.0	0.8572
AT2G06050		AtOPR3, DDE1, O...	DELAYED DEHISCENCE 1, oxophyto...		Lus10028663 [exp]	3.2	0.8158
AT3G22970			Protein of unknown function (D...		Lus10003087 [exp]	4.7	0.8514
AT2G46490			unknown protein		Lus10040009 [exp]	4.9	0.7787
AT3G22970			Protein of unknown function (D...		Lus10014718 [exp]	5.2	0.8502
AT3G45970		ATHEXPBETA2.1, ...	EXPANSIN L1, expansin-like A1 ...		Lus10023968 [exp]	6.0	0.8131
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029334 [exp]	6.0	0.8177
AT1G01260	bHLH	bHLH013, INU4	basic helix-loop-helix (bHLH) ...		Lus10030243 [exp]	9.4	0.8487
AT2G41290		SSL2	strictosidine synthase-like 2 ...		Lus10010448 [exp]	10.1	0.7577
AT3G06260		GolS9, GATL4	galactinol synthase 9, galactu...		Lus10012765 [exp]	11.2	0.7859

Compare expression of checked genes

Lus10041591 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.